- Probe CUST_2873_PI390587928
- Source Contig U35_496
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2873_PI390587928 | Hv_44K_v2 | CATGACTCGGTTGTTCTTTCGTGTATGTACACATGATCTTATTCATTTACATAATGAGCA | 769 | GeneList: salmon MasterList: Structural_proteins_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.491 | 4.157 | 1.213 | 0.677 | 0.174 | 0.199 |
| Raw | 231.332 | 335.720 | 87.302 | 81.548 | 6.315 | 8.156 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_4856.1 | 1042 | 3e-21 | 407 - 464 | 98 | 57 / 58 | minus | ABC03588 ABC40887 |
| JLOC1 | JLOC1_3078.1 | 2295 | 2e-21 | 1660 - 1717 | 98 | 57 / 58 | minus | |
| Harvest21 | ABC31223 | 561 | 6e-22 | 497 - 554 | 98 | 57 / 58 | plus | |
| Harvest21 | ABC03590 | 1125 | 6e-22 | 11 - 68 | 98 | 57 / 58 | minus | |
| Harvest21 | ABC03588 | 1004 | 6e-22 | 937 - 990 | 100 | 54 / 54 | plus | ABC03588 |
| Harvest21 | ABC03587 | 867 | 6e-22 | 41 - 98 | 98 | 57 / 58 | minus | |
| Harvest35 | U35_496 | 837 | 3e-25 | 770 - 829 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_31079 | 561 | 6e-22 | 497 - 554 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_417 | 1529 | 6e-22 | 1427 - 1484 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_381 | 1004 | 6e-22 | 937 - 990 | 100 | 54 / 54 | plus | |
| Harvest35 | U35_245 | 1458 | 6e-22 | 1391 - 1448 | 98 | 57 / 58 | plus |
Contig Sequence (837 bp)
>U35_496 837 Hv_44K_v2 GGAAACCTGAGCCCAAACCTGAGCCTATGCCTAAACCAGAACCGAAACCGGAGCCCAAAC CTGAGCCCATGCCAAAACCTGAACCAAAGCCTGAGCCCAAACCAGAGCCGATGCCAAAAC CCGAACCAAAGCCAGAGCCCAAACCAGAGCCGATGCCAAAACCCGAACCAAAGCCAGAGC CCAAACCCGAGCCGATGAAGCCTGAGCCTAAACCGATGCCAAAACCCGAACCGAAGCCAG AGCCCAAGCCCGAGCCGATGCCAAAACCTGAACCCAAGCCAGAGCCGATGCCAAAACCCG AACCGAAGCCAGAGCCCAAACCCGAGCCGATGCCAAAACCTGAACCCAAGCCAGAGCCGA TGCCAAAGCCGGAGCCTAAGCCCGAGCCGATGCCAAAGCCAGAGCCCAAGCCTTACCCAA TGCCAAAACCAGAGCCCAAGCCTCAACCCATGCCTAAGCCAGAGCCCAAGCCTGAACCCG AACCCAAGCCGGAGCCGCCTCCGAAGGGCAAGCCGCCGATGACGGACAATTGATGTGATG CTCACATATGACAGCCGAAGGAGGAGGAGATCGACCCCGTCCGGAGCCACGATGTGCTAT TTCCAGAATAAGTGGCATAGTATCCGGCTAGCGAGATAGTGATGATGCATCTTTTTTGCA TTCCTTGTATTCCATCATCCCTTTTTAGTTTCTCTTGTTCCATGCACCCATGATGATTAT TACTACTTTGTAATTATCATTTGCGTGCTGGTATGCGTTCATCTGTGCACATGACTCGGT TGTTCTTTCGTGTATGTACACATGATCTTATTCATTTACATAATGAGCAATATGTGC
Homology of Contig U35_496 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |