barSeed - Barley Seed Development Database

Probe CUST_28715_PI390587928

Source Contig U35_27322

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28715_PI390587928	Hv_44K_v2	ACATTGCTGCCTACAGAACACTGATTTTTCATTAAGAACAGTGGCGCCTGAGCCAAAAAA	665	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.153	3.588	2.086	0.426	0.245	0.218
Raw	63.360	172.627	82.095	26.420	2.854	2.961

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_14093.1	1350	6e-21	1268 - 1324	98	56 / 57	plus
Harvest35	U35_27322	736	3e-25	666 - 725	100	60 / 60	plus

Contig Sequence (736 bp)

>U35_27322 736 Hv_44K_v2
CTTCAGCCTCGTGGACGAGGACAGGAAGAGCATCCAGCCGGGCAACTTCGAGCGCCACTG
GGGCATCTTCTTCTACGACGGGAAGCCCAAGTACCAGCTCGGCCTCCGCGGCAGTGGCGG
CGGCATGCTTGTGCCGGCGAGGGGCGTCGAGTACCTCCAGAGGCGGTGGTGCGTGCTCAA
GCCCGGCGCCGACCTCGCCGACCAGAAGGTCGGCGACAGCGTGAGCTACGCCTGTGGTAG
TGCCGACTGCACCAGCCTCGGGTACAAGACCTCGTGCGGCGGCCTCGACGCCAAGGGCAA
CGTGTCCTACGCGTTCAACAGCTACTACCAGACCGAGGACCAGGACGACCGGGCCTGCGA
CTTCCGCGGACTCGCCACCACCACCACCGTCGACCCCTCCAGCGGGACGTGCCGGTTCAT
CGTCGGGATCGCGCCGACCAGCACGGGCACGGCGACGAGGAACGTCGGGGCCAGGACCGC
GGCCGTCCTCTTCGCGCTGTTGCTCGCGGGCGTGTTCTGAATTCAGGATTGTGGTCGGTG
CTTCATTAGTTTAGTTGTCATCTTTCAGCTTATCTTTTTTTCTAGGCAGAGATAGCTGTT
CATCTTGATTGTCGATTTTCCTTGTCGTCTGTCCGTTCTGTGGTTTCCAGACCAGAATAC
ATGCAACATTGCTGCCTACAGAACACTGATTTTTCATTAAGAACAGTGGCGCCTGAGCCA
AAAAAAAAAAAAAAAA

Homology of Contig U35_27322 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g12800.1	495	3e-84	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi3g18220.1	486	1e-87
Arabidopsis v10	AT4G31140.1	484	1e-56	O-Glycosyl hydrolases family 17 protein \| chr4:15141581-15143188 FORWARD LENGTH=484