barSeed - Barley Seed Development Database

Probe CUST_28709_PI390587928

Source Contig U35_27327

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28709_PI390587928	Hv_44K_v2	CTATAAGATCCATGAGTCCTGGAAGGAGAGAACAAAGACTGGGATCCAGTGCTTCAAGTA	971	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59542.2	2773	2e-24	1321 - 1380	100	60 / 60	plus	ABC48276
MLOC	MLOC_59542.1	2822	2e-24	1359 - 1418	100	60 / 60	plus	ABC48276
JLOC1	JLOC1_38755.1	2924	8e-25	1304 - 1363	100	60 / 60	plus
Harvest21	ABC23424	1044	3e-25	972 - 1031	100	60 / 60	plus
Harvest35	U35_27327	1044	3e-25	972 - 1031	100	60 / 60	plus

Contig Sequence (1044 bp)

>U35_27327 1044 Hv_44K_v2
GCTGCTTTACGGTCATTCGCTGCCGCTTTCGGTGCTCAAGATGCTTATGGAGGGCAGCCC
GCCTCTTCTCGTGGCCAGGATGCCGGTGGAGGACAGGCTACCGCCTTTGCTGATAAGTAT
GCTGCTAATGGAGCTACAAATCCTGGCGCCACCGCTGACTGTCCAATTGATGCCACCCCT
ATATCAGCTTACAGGTCGACACCGCCAACAATTATACCACTGGACGACGATGACGATGAC
AATGAGCATTTGGCTGGCAACCAAACGTCAGCATCTGGGCGGAAGATCAAGAGGCCGTCC
CACCTAAGTGGATATAAGATGAGTGGCGGTTTCGGCAGTGATGACAGCAATGTTGTGAAG
GCCAAACGCCACAGGTCCTCTTACAGGAAGGCTGGTGCTGACAATGAGTTTACCTTGGTG
CCCCTTTCATCAAGCAATCCCAGGGAGGTTGTGGAAGAGGTTCTCATGACCTTTGAGGCC
CTGCGGCGTAGATATCTTCAGGTAGATCAGGCACAAGAGAGTAGCAAACGTCCAGACCTT
AAGGTTGGTGCGATGATGATGGCACGTAATCTCAGGGCTAACATAGGCAAGAGGATTGGA
GTTGTCCCTGGAATCGAGATAGGGGATATTTTCTACTTCAGGATGGAGCTATGCATTATT
GGCTTGCATTCTCCTACCATGGCTGGAATTGATTATATGACCCACACCTTTGGTGATAAG
GATGATGATTCTGTAGCAATATGTATTGTTGCTGCAGGTGTTTATGAGAATGAAGATGAT
GCTACAGACACACTAGTCTACAGTGGTTCAGGAGGTAGTAGCAAGAACAATGAGGAGATG
CATGACCAGAAGCTTGAGAGAGGTAACCTTGCTCTTCAGACGAGCCTGTTGAGAAAGAAT
GTGATCCGGGTTGTACGGGGATTTAAAGATCCAGGTTGCCTGGGTGGGAAGGTTTATATG
TATGATGGCCTCTATAAGATCCATGAGTCCTGGAAGGAGAGAACAAAGACTGGGATCCAG
TGCTTCAAGTACAAGCTGCTGCGG

Homology of Contig U35_27327 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g59620.1	737	4e-140	protein\|histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed
Brachypodium v1_2	Bradi4g25940.2	665	2e-114
Arabidopsis v10	AT5G04940.1	670	2e-59	\| Symbols: SUVH1 \| SU(VAR)3-9 homolog 1 \| chr5:1454616-1456628 REVERSE LENGTH=670