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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_28708_PI390587928Hv_44K_v2TAACATTGTACTCCCTCTGTAAAGAGTACATATTATCTGCAAACCCATCAATTTTTGTGG343GeneList: green
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.0991.2301.0621.0060.3610.376
Raw 374.247663.594493.296732.58593.638105.413



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK3721237673e-21594 - 6549759 / 61plus ABC39632
MLOCMLOC_13246.215163e-211345 - 14059759 / 61plus ABC39632
MLOCMLOC_13246.115823e-211392 - 14529759 / 61plus ABC39632
JLOC1JLOC1_8944.214882e-211233 - 12939759 / 61plus
JLOC1JLOC1_8944.114552e-211200 - 12609759 / 61plus
Harvest21ABC396324193e-2518 - 7710060 / 60minusABC39632
Harvest35U35_273284203e-25344 - 40310060 / 60plus



Contig Sequence (420 bp)

>U35_27328 420 Hv_44K_v2
AATCATGGATGGAAGAGAGCTGTTGCATGGGATATGCTGAAAATATATAATGATTTCATT
GATGGTGGAGAAAGGCGTAGGATTGAGCGGCTAGAATTGTTTGATGAGTTTGAAGAGTGG
CATATGATGCAGGAACACTATTGTGTTGCGTATGGGATAAATGACACCGAGGGGATATTC
GATGATTTTGGGTTCAAGGAGTAGCACTCCTCCGCTTTAGCAGCAGGCGGGCAGGCATCA
GAAGCATGCGAATGCAAGGCGATTCGAACTGGAGAAGCCCCACAGGAACCTGTACTTGGA
CTGCGATACCTTTTTCGGTTTACAAGGAATGATGGCTGTAACATAACATTGTACTCCCTC
TGTAAAGAGTACATATTATCTGCAAACCCATCAATTTTTGTGGTAAAAAAAAAAAAAAAA



Homology of Contig U35_27328 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None