barSeed - Barley Seed Development Database

Probe CUST_28702_PI390587928

Source Contig U35_39304

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28702_PI390587928	Hv_44K_v2	CAAGCGTACGGGCGATAAGTTGTTTGTAATATCTGTGTGATTTTGTAACCAAAGTTTTTA	58	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13516.1	505	7e-23	299 - 358	98	59 / 60	plus	ABC00444
JLOC1	JLOC1_9164.1	487	4e-23	299 - 358	98	59 / 60	plus
Harvest21	ABC00444	1058	1e-23	952 - 1011	98	59 / 60	plus	ABC00444
Harvest35	U35_39304	642	3e-25	59 - 118	100	60 / 60	minus
Harvest35	U35_14897	572	1e-23	466 - 525	98	59 / 60	plus

Contig Sequence (642 bp)

>U35_39304 642 Hv_44K_v2
TTTTTTTTTTTTTTTTTGATGCATCTTTAGTACAAAGATGTACGGAGTACTTGATTTATA
AAAACTTTGGTTACAAAATCACACAGATATTACAAACAACTTATCGCCCGTACGCTTGAC
TGTGCATCATGATGATGCAGAGGCCCGGGTCTCCCCCTTTTGGAGAAAAAGAAAACACTT
GACTGACACACTGATACATCTGGTCGCCTCATAACTCGATCTTATTGTGATCACTCGTCC
GCAGATACTGAAGAAAACCAAACCAACCATGCATGCGATGCGATAATCATAAATAGCGGT
CACTCAATCAGTCACCGACAGCACGAAACCATGCCGATCCAGTGCTGAGCGGGAAGGTGG
TTGATCGGACTCAGTGGTGTCCGTGGTATCCACCGCCGCCGCCGCCGCCGCCACTGCCGT
AAGTGGGCGTGGGAGGGACGGGGTGGTAGTCCGGGTGGGGCTGCGGCTTGGGCTCCGGCT
TGGGCACGGGGCCGTAGTCAGGGTGGGGCTCTGGCTTGGGCTCCGGCTTCGGCGGCACGG
GCTTCTTGTGGTGGAAGTGCTCCATGATGTGCTTCTTGATCGGTCCGCACAGGGTCATGG
ACGCGCACTCCGGCGAACCCGCGGACGGTGTGGCGGTGTGGT

Homology of Contig U35_39304 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None