barSeed - Barley Seed Development Database

Probe CUST_286_PI415269222

Source Contig TA51900_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_286_PI415269222	Hv_44K_v2	TACCAAATCATGATCTTGTACTGTGGTTTAGCAACGGAAAGAGGCATGAATTTGTATGCG	579	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.626	2.585	1.046	0.826	0.756	0.674
Raw	33.570	38.974	13.378	15.218	3.469	3.449

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54501.1	2818	2e-24	1898 - 1957	100	60 / 60	plus	ABC17711 ABC21718 ABC25907
JLOC1	JLOC1_35083.1	2392	8e-25	1486 - 1545	100	60 / 60	plus
Harvest21	ABC21718	645	3e-25	18 - 77	100	60 / 60	minus	ABC21718
Harvest35	U35_9214	695	3e-25	619 - 678	100	60 / 60	plus

Contig Sequence (639 bp)

>TA51900_4513 639 Hv_44K_v2
GTCACAAGATAGAGAAGATCAAGACGGACACCATGTTCATCTCCAACACCAAGAACGGCG
TACGCGTCAAGACCTACGAGAACGGCTGCGGCTTCGCGCGCAAGGTGAAGTTCGCGCAGA
TCATGATGAGGAACGTGGCCAACCCCATCATCATCGACCAGCACTACTCCGCCTCCAACC
GGGGAACTCACTGCGGCGCCCCGAACGGGAGCGCGGTGGCTGTGGAGAACATCAACTACA
TCGACATCACCGGCACGTCGGCGACGGAGCAGGCGGTGACGTTCGCGTGCAGCGACGCCA
TGCCGTGCAGGCGCCTGTATCTGGACGGGGTGAACCTGACGACGGTCGGCGGGGGGAACA
CGTCCGCCTACTGCCACCAGGCGTTCGGGAAGCACGTCGGGAACGTCCTCCCGGAGTCGT
GCCTCGGCAAGGAGGACTTCGTCCAGCTGCAAGCCCCGACCACCGGAGACGAAGAAGATG
CTGACTGGTGAAAGAAACTGTTCCAAGAATTTTGCCGCGCGTGGCACTGTATGTGATCTT
GTAGCGCTTTTCGATCAAGAATGTAGCTTCAAGGCGATGTACCAAATCATGATCTTGTAC
TGTGGTTTAGCAACGGAAAGAGGCATGAATTTGTATGCG

Homology of Contig TA51900_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g46520.1	446	3e-57	protein\|polygalacturonase, putative, expressed
Brachypodium v1_2	Bradi2g18040.1	446	4e-77
Arabidopsis v10	None