barSeed - Barley Seed Development Database

Probe CUST_286_PI390587928

Source Contig U35_32033

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_286_PI390587928	Hv_44K_v2	CGCCGCGGCTGTCCATCTCCCGCCGGTACTCGACGCAGCTCCTGAACGGCAGCTTCAGCA	329	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64938.2	1972	2e-24	1207 - 1266	100	60 / 60	plus	None
MLOC	MLOC_64938.1	2550	2e-24	1460 - 1519	100	60 / 60	plus	ABC42269
JLOC1	JLOC1_42680.1	2477	8e-25	1293 - 1352	100	60 / 60	plus
Harvest35	U35_32033	389	3e-25	330 - 389	100	60 / 60	plus

Contig Sequence (389 bp)

>U35_32033 389 Hv_44K_v2
CACGACGCCGAGGGGTAACGCGGCGTACCGAGAGGTCGTCGTCAGCGTGGACCACCACTT
CGCCGGCTCCTTCGTGCCGTTCCCCGTCATCTACACGGGCGGCATCAACCCGCTCTACTG
GCAGCCCGTGTCCGCGCTCGGCGCGTTCGACCTGCCCACCTACGACATCGAGCTCACCCC
GTTCCTCGGCCTCCTCGTCGACGGCAAGGCGCACGAGTTCGGGATCAGCGTGGTGGACGG
CATCGCCGAGTGGCTCGTGGACGCCAACCTTCACCTCTGGCTGGACCCCAGCGCGTCGGC
CGTGCAGGCGTCGCTCGGCCGGTACCGGACGCCGCGGCTGTCCATCTCCCGCCGGTACTC
GACGCAGCTCCTGAACGGCAGCTTCAGCA

Homology of Contig U35_32033 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g32820.1	613	1e-69	protein\|peptide-N4-asparagine amidase A, putative, expressed
Brachypodium v1_2	Bradi2g26240.1	629	4e-79
Arabidopsis v10	None