barSeed - Barley Seed Development Database

Probe CUST_28698_PI390587928

Source Contig U35_3286

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28698_PI390587928	Hv_44K_v2	CTCTAATATGTGTACAGCAAAGAAATCGTTGGAATGTGCAAGGCGTTTGCATTCAAAAAA	1479	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.471	2.016	1.265	0.837	0.322	0.362
Raw	861.189	1808.366	999.701	1021.562	139.562	170.445

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_3286	1549	3e-25	1480 - 1539	100	60 / 60	plus

Contig Sequence (1549 bp)

>U35_3286 1549 Hv_44K_v2
TGGCTACACAAAATTGTTTCTTCGTACGGGACAGGTTGCTGTGCTGGAAAATGGTAAAAA
CCGGATGTTCCATGGAGCTCTTCGGATTCAGAGAAACTTCCGTGGGTTGCATACTCGACG
AGAATATCACACACTGAAGAAAGGAGCAACGGCTTTGCAGTCATTTGTAAGAGGTGAAAA
GGCAAGATTTAGATTCGATTATCTTTTCAAGAGATGGAGGGCAGCTGTTCTCATACAGAA
GTATACTAGGCGTCGACTTGCAGCCACCATGTTTACTGATCAGCTAAAAAATATTGTTGT
TCTACAGTCTGTGATGCGTGGGTGCCTGGCCAGGAAGAAATTCAAGTGCCTGCAGGAAGA
AAAGGAATCTAAAGTCATTAACATCAAAGTTAAAAGGGATGTAAGGAATAACATTTCACA
AGCGGGGTTATGCCATGAAATGAATGGAGTGTATCCTCGCCAACCAGTTGTCACAGAACT
CCAGGGACGTGTTTCAGAAGCTGAGGCTTTATTGCGAGACAAAGAGGAAGAAAATGCGAT
GCTGAAGCAACAATTGGAACAGTATGAGAACAAATGGTCAGAATATGAGGCCAAAATGAA
AGTTATGGAAGAGGCATGGAAGAAACAGCTCTCTTCTCTGCAGTTGAGTCTCGTGGCTGC
TAAGAAGAGCCTAGCTTCTGATGACATGGTCATCCGAGCAGCTCGGACTGATACCACTCC
AACGCATGCTCAATACGACTCTGAAGATACAATGTCCACAGGGACCCATACCCCGGAAGG
AACAGAGTTGAAATTCCAAAACCACAACCCTGAACCTAGAGTGGTGACAGGAAACTCAGA
TAGGCGGATAAATGTAGTGAATCACCTAGCAAAGGAGTTTGAGGACAGGCGGCAGGTGTT
TGACGACGACGCTGGCTTCCTTGTCGCCGTGAAATCTGGACAGATCGGTTCGAATATGAA
TCCGGATGACGAACTCAGGAAGCTGAAGGACCGGTTTGCTACATGGAAGAAAGACTACAA
ATCTCGGTTGAAGGAGACCAAGGTAAACCTTCAGAAGGTCAGCAGCCATGACGAGAAATC
TCGGAAAAGATGGTGGGGGAAGAAGAGCTCCAAGTGAACATGGAAGCTACAAGGTCAGAG
CATTTCCTCACATTTTGCGTGCAATTGCATCAAATGAAGAGATCAACAGATGGCAGGAGA
GAAGGCGGTTTCGTGATTCTCACTCTCTATCACGATCAAGCCTGGTGAGATGGCGGAGAC
GGTGGACTCCATCGCTGATACCTGCGCGTCCAGTTTTTTGGGAGTGTCAGAAAGAATTGC
AAGAGGCACAGCAAGAGATCTGTACATGTATGTTAGTTCTGAGTTGTCAGTGTATGTATG
TGTATGTTGTCGTGTATGTAGAGCGATGAACCGGAAATATGAAAGGGTAATTAAATACAG
ATTATCCGCCCGAGAGCGAATAGAGATGCAACAGCAGGACTCTAATATGTGTACAGCAAA
GAAATCGTTGGAATGTGCAAGGCGTTTGCATTCAAAAAAAAAAAAAAAA

Homology of Contig U35_3286 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g37560.3	855	4e-178	protein\|myosin-Vb, putative, expressed
Brachypodium v1_2	Bradi1g24747.1	1195	0.0
Arabidopsis v10	AT3G19960.2	1176	1e-66	\| Symbols: ATM1 \| myosin 1 \| chr3:6949787-6956736 FORWARD LENGTH=1176