barSeed - Barley Seed Development Database

Probe CUST_28697_PI390587928

Source Contig U35_3287

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28697_PI390587928	Hv_44K_v2	TCTGACTGAAGCTGTAAATCATTCCCAGTATCCCCATCTATATCTTTCAATAAAATGGAA	1736	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.936	1.385	1.916	1.792	0.679	0.658
Raw	1491.797	3510.062	4235.017	6211.750	823.386	872.397

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55380.1	2401	2e-24	136 - 195	100	60 / 60	minus	ABC07287 ABC07288
JLOC1	JLOC1_35715.1	2163	8e-25	1969 - 2028	100	60 / 60	plus
Harvest21	ABC07287	1844	3e-25	1737 - 1796	100	60 / 60	plus	ABC07287
Harvest35	U35_3287	1844	3e-25	1737 - 1796	100	60 / 60	plus

Contig Sequence (1844 bp)

>U35_3287 1844 Hv_44K_v2
CGCGCTACTAGTAGTATTCCTGGTGTAGTCTAGTAGTACTCCTCCTCCTCCTTCTCCTCC
TACCCGTTTCCTCATGGCCACCGTACGCCAGAGCGACGGAGTCGCCGCGAACGGCCTTGC
CGTGGCCGCAGCCGCGAACGGCAAGAGCAACGGCCATGGCGTGGCTGCCGCCGTGAACGG
CAAGAGCAACGGCCATGGCGTGGCTGCCGACGCGAACGGCAAGAGCAACGGCCATGGCGT
GGCTGCCGACGCGAACGGCAAGAGCAACGGCCATGCCGAGGCCACTGCGAACGGCCACGG
CGAGGCCACTGCGAACGGCAAGACCAACGGCCACCGCGAGAGCAACGGCCATGCTGAGGC
CGCCGACGCGAACGGCGAGAGCAACGAGCATGCCGAGGACTCCGCGGCGAACGGCGAGAG
CAACGGGCATGCGGCGGCGGCGGCAGAGGAGGAGGAGGCGGTGGAGTGGAATTTCGCGGG
TGCCAAGGACGGCGTGCTGGCGGCGACGGGGGCGAACATGAGCATCCGGGCGATACGGTA
CAAGATCAGCGCGAGCGTGCAGGAGAAGGGGCCGCGGCCCGTGCTGCCGCTGGCCCACGG
GGACCCGTCCGTGTTCCCGGCCTTCCGCACGGCCGTCGAGGCCGAGGACGCCGTCGCCGC
CGCGCTGCGCACCGGCCAGTTCAACTGCTACCCCGCCGGCGTCGGCCTCCCCGCCGCACG
AAGCGCCGTGGCAGAGCACCTGTCGCAGGGCGTGCCGTACATGCTATCGGCCGACGACGT
CTTCCTCACCGCCGGCGGGACCCAGGCGATCGAGGTCATAATCCCGGTGCTGGCCCAGAC
CGCCGGCGCCAACATTCTGCTCCCCAGGCCAGGCTACCCAAACTACGAGGCGCGCGCCGC
GTTCAACAGGCTGGAGGTCCGGCATTTCGACCTCATCCCCGACAAGGGGTGGGAGATCGA
CATCGACTCGCTGGAATCCATCGCCGACAAGAACACCACCGCCATGGTCATCATAAACCC
CAACAACCCGTGCGGCAGCGTTTACTCCTACGACCATCTGTCCAAGGTCGCGGAGGTGGC
GAAAAGGCTCGGAATATTGGTGATTGCTGACGAGGTATACGGCAAGCTGGTTCTGGGCAG
CGCCCCGTTCATCCCAATGGGAGTGTTTGGGCACATCACCCCTGTGCTGTCCATAGGGTC
TCTGTCCAAGTCATGGATAGTGCCTGGATGGCGGCTTGGATGGGTAGCGGTGTACGACCC
CAGAAAGATCTTACAGGAAACTAAGATCTCTACATCAATTACGAATTACCTCAATGTCTC
GACAGACCCAGCAACCTTCATTCAGGCAGCTCTTCCTCAGATTCTTGAGAACACAAAGGA
AGATTTCTTTAAGGCGATTATTGGTCTGCTAAAGGAATCATCAGAGATATGCTACAAACA
AATAAAGGAAAACAAATACATTACATGTCCTCACAAGCCAGAAGGATCAATGTTTGTCAT
GGTGAAACTGAACTTACATCTTTTGGAGGAAATAGACGATGACATTGATTTTTGCTGCAA
GCTCGCAAAAGAAGAATCAGTAATCTTATGCCCAGGGAGTGTTCTTGGAATGGCAAACTG
GGTCCGCATTACTTTTGCTTGTGTTCCATCTTCTCTTCAAGATGGTCTCGGAAGGATCAA
ATCATTCTGTCAAAGGAACAAGAAGAGAAATTCGAGCGATGATTGCTAGTTGTATATCTG
ACTGAAGCTGTAAATCATTCCCAGTATCCCCATCTATATCTTTCAATAAAATGGAACTTT
TAGTTCTCTATGAATAGAAGTCAACATCTCCTTGAAAAAAAAAA

Homology of Contig U35_3287 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g20360.1	495	0.0	protein\|tyrosine aminotransferase, putative, expressed
Brachypodium v1_2	Bradi3g11430.1	470	0.0
Arabidopsis v10	AT5G53970.1	414	2e-137	Tyrosine transaminase family protein \| chr5:21910676-21912594 FORWARD LENGTH=414