barSeed - Barley Seed Development Database

Probe CUST_28696_PI390587928

Source Contig U35_3288

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28696_PI390587928	Hv_44K_v2	TTTGATGTATTTGGCCTCATTGCCTTGCATCAATTTCAATAAAAATGGTTGTGTACACCA	1401	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.466	2.151	3.609	2.560	0.650	0.466
Raw	86.765	620.510	876.487	995.481	89.207	69.135

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371155	1626	9e-22	1507 - 1564	98	57 / 58	plus	ABC07287 ABC07288
JLOC1	JLOC1_2700.1	1790	8e-25	1693 - 1752	100	60 / 60	plus
Harvest21	ABC07288	1477	3e-25	1402 - 1461	100	60 / 60	plus	ABC07288
Harvest35	U35_3288	1477	3e-25	1402 - 1461	100	60 / 60	plus

Contig Sequence (1477 bp)

>U35_3288 1477 Hv_44K_v2
GGCGGTGGAGTGGAATTTCGCCCGGGGCAAGGACGGCATCCTGGCGACGACGGGGGCGAA
GAACAGCATCCGGGCGATACGGTACAAGATCAGCGCGAGCGTGGAGGAGAGCGGGCCGCG
GCCCGTGCTGCCGCTGGCCCACGGTGACCCGTCCGTGTTCCCGGCCTTCCGCACGGCCGT
CGAGGCCGAAGACGCCGTCGCCGCCGCGCTGCGCACCGGCCAGTTCAACTGCTACGCCGC
CGGCGTCGGCCTCCCCGCCGCACGAAGCGCCGTAGCAGAGCACTTGTCACAGGGCGTGCC
CTACAAGCTATCGGCCGACGACGTCTTCCTCACCGCCGGCGGAACTCAGGCGATCGAAGT
CATAATCCCGGTGCTGGCCCAGACTGCCGGCGCCAACATACTGCTTCCCCGGCCAGGCTA
TCCAAATTACGAGGCGCGAGCGGCATTCAACAAGCTGGAGGTCCGGCACTTCGACCTCAT
CCCCGACAAGGGGTGGGAGATCGACATCGACTCGCTGGAATCCATCGCCGACAAGAACAC
CACCGCGATGGTCATCATAAACCCAAACAATCCGTGCGGCAGCGTTTACTCCTACGACCA
TCTGGCCAAGGTCGCGGAGGTGGCAAGGAAGCTCGGAATATTGGTGATCGCTGACGAGGT
TTACGGCAAACTGGTTCTGGGCAGCGCCCCGTTTATCCCGATGGGCGTCTTTGGGCACAT
TGCCCCGGTCTTGTCCATTGGATCTCTGTCCAAGTCGTGGATAGTGCCTGGATGGCGACT
TGGATGGGTGGCGGTGTACGACCCCACAAAGATTTTAGAGAAAACTAAGATCTCTACGTC
TATTACGAATTACCTTAATGTCTCAACGGACCCAGCAACCTTCGTTCAGGAAGCTCTTCC
TAAAATTCTTGAGAACACAAAAGCAGATTTCTTTAAGAGGATTATTGGTCTACTAAAGGA
ATCATCAGAGATATGTTATAGGGAAATAAAGGAAAACAAATATATTACGTGTCCTCACAA
GCCAGAAGGATCGATGTTTGTAATGGTCAAACTAAACTTACATCTTTTGGAGGAGATCCA
TGACGACATAAATTTTTGCTGCAAGCTCGCAAAGGAAGAATCAGTAATTTTATGTCCAGG
GAGTGTTCTTGGAATGGAAAATTGGGTCCGTATTACTTTTGCCTGCGTTCCATCTTCTCT
TCAAGATGGACTCGAAAGGGTCAAATCATTCTGTCAAAGGAACAAGAAGAAGAATTCTAT
AAATGGTTGTTAGTTGTACACACCCCTAGTTGTACATCTGACTGAAGCTGTAAATCATTT
CTAGTTATCCCCCATTTATATATTTCAATAAAACATATTGTAATGGTTCTGTTGTAGCTG
TCCAAGTCATGTACTCTACTTTTTGATGTATTTGGCCTCATTGCCTTGCATCAATTTCAA
TAAAAATGGTTGTGTACACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3288 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g20360.1	495	0.0	protein\|tyrosine aminotransferase, putative, expressed
Brachypodium v1_2	Bradi3g11430.1	470	0.0
Arabidopsis v10	AT5G53970.1	414	8e-146	Tyrosine transaminase family protein \| chr5:21910676-21912594 FORWARD LENGTH=414