barSeed - Barley Seed Development Database

Probe CUST_28682_PI390587928

Source Contig U35_20302

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28682_PI390587928	Hv_44K_v2	ATATTCCTTCATAAGGACTGGATTATGGAGCAGTGGGAAAATAACTACTACATCAGTGCC	1749	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.799	1.038	1.622	1.527	0.911	0.880
Raw	190.310	364.923	522.357	729.114	162.611	171.376

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11943.2	2754	2e-24	794 - 853	100	60 / 60	minus	ABC09198
MLOC	MLOC_11943.3	2359	2e-24	673 - 732	100	60 / 60	minus	ABC09198
MLOC	MLOC_11943.4	2509	2e-24	668 - 727	100	60 / 60	minus	ABC09198
MLOC	MLOC_11943.1	2859	2e-24	798 - 857	100	60 / 60	minus	ABC09198
JLOC1	JLOC1_7968.2	3073	8e-25	1987 - 2046	100	60 / 60	plus
JLOC1	JLOC1_7968.1	2796	8e-25	1710 - 1769	100	60 / 60	plus
Harvest21	ABC13016	1808	1e-24	1750 - 1808	100	59 / 59	plus
Harvest35	U35_20302	1809	3e-25	1750 - 1809	100	60 / 60	plus

Contig Sequence (1809 bp)

>U35_20302 1809 Hv_44K_v2
CCCGGGCTGCAGGAATTCGGACGAGGCCCAGCGGCGTGCGTGTATGTGTGTGCGCCTCTG
CGGGGCACCAAACACCAACCTCCCCCTCTCCCCGCCGCCTCCTCTTCGCCGCCGCCGCCG
CCGCACGGTCTCCACCCCCAAGATTAGTATGTGGTAGGAAGTGCATGGGGAGAAAGGATG
CCAGAGTTGCGTAGTGGAGTTCGACAATCTCGGTTGAAGTCGAGGAAGGCTGAGGATCCC
GACGTACAGGACCCGGCAGAGAACTTGGCAGTGACAGCGCCTACGGTGGCAGGAAGACGC
GGAAGAGGAAGGGGTGGGAGAGGTGGAGGCCGAGGATCAGGGAGGGGAAGGGCAGGAGGA
AGAGGGAGAGGTGTTCCTGTGATTGACTTGGATCCAGACCAGCCTTTTGGTGTTCTTCCT
GGAGCTGCTGTTGGTGGAGGTGCTGTGGGTGGTCCACAGCGCATCGAGGAATTTGCTGAT
AAGGTTGTGAAGATGGATGGCGTGAGTCCTGAGAAGATCGGTGGTGGTGAAGATGATGCA
TCTCCAGTCCCAGAGAAGGTTCAAGTAGGCCATTCTCCACAGTATAAGGTAGAGCGGAAA
TTGGGCAAGGGTGGTTTTGGGCAGGTTTATGTTGGCAGAAGAGTTTCTGGTGGAACGGAG
CGAACTGGACCAGATGCTTATGAGGTTGCTTTGAAATTTGAGCACCGCAACAGTAAGGGG
TGCAATTATGGCCCTCCATATGAGTGGCAAGTTTATAGCTCTCTGAACGGATGTTATGGT
ATACCGTGGGTTCACTACAAAGGCCGTCAAGGGGACTATTATGTGCTGGTAATGGATATA
CTAGGCCCTAGCCTTTGGGATGTTTGGAATTCTTTAGGGCAAACAATGACTCCAAGTATG
GTTGCTTGCATCGCTGTAGAGGCTATATCTATCCTTGAGAAACTTCATGCAAAGGGGTTT
GTTCATGGAGATGTTAAGCCAGAGAATTTTCTACTTGGCCAACCTGGATCACCTGATGAG
AAGAAGCTTTTTCTGATTGACCTTGGGTTGGCATCGAAATGGAAGGAAACATCGTCTGGG
CAACATGTTGACTACGATCAGAGGCCTGATATTTTTAGGGGCACAATAAGATATGCTAGT
GTGCATGCCCATTTGGGCCGCACTGGTAGCAGAAGGGATGATCTGGAATCACTAGCATAC
ACATTGATATTTCTACTCAGAGGAAGGTTACCTTGGCAGGGCTATCAGGGGGACAACAAG
AGCTTTCTTGTTTGCAAGAAGAAAATGTCTATCTCTCCAGATCTGATGTGCTGTTACTGC
GCACCTCCTTTTAAACTTTTTCTGGAAACCGTGACAAACATGAAATTCGATGAAGAACCA
AACTACCCGAAGCTTATTTCCCTCTTTGATGAATTGATTGAGCCCCAGCATTTGAGGCCT
ATTAGAATTGATGGTGCTCTAAAGGCTGGACAAAAACGAGGAAGAGTAAGTCATGAAGAA
GATGAACAACCGAGGAAGAAAGTTCGACTGGGAAGCCCCGCAAATCAGTGGATTTCAGTA
TATAATGCTAAGAGGCCCATGAAACAGAGGTATCATTACAATGTAGCAGAAGCCCGACTT
CATCAACACATAGAGAAAGGGAATGAAGATGGATTGTTTATTAGTTCGGTAGCATCTTCA
GCAAATCTCTGGGCCCTTATTATGGATGCTGGAACCGGGTTCACATCCCAAGTTTACGAA
CTTTCACCAATATTCCTTCATAAGGACTGGATTATGGAGCAGTGGGAAAATAACTACTAC
ATCAGTGCC

Homology of Contig U35_20302 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g56580.1	699	protein\|CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed
Brachypodium v1_2	Bradi2g51370.1	699
Arabidopsis v10	AT3G03940.1	701	Protein kinase family protein \| chr3:1014412-1018244 REVERSE LENGTH=701