barSeed - Barley Seed Development Database

Probe CUST_2867_PI390587928

Source Contig U35_22801

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2867_PI390587928	Hv_44K_v2	CACCACCAGACCAGTTCTCAGCAGAGTTCTGTTCATTCGTTTCCGCATGTATCCAAAAAA	103	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.259	1.455	1.057	0.769	0.271	0.381
Raw	158.204	261.248	182.204	205.380	25.971	39.869

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5024.2	1089	2e-24	330 - 389	100	60 / 60	minus	ABC24896 ABC39926
MLOC	MLOC_5024.1	1692	2e-24	473 - 532	100	60 / 60	minus	ABC24896 ABC39926
JLOC1	JLOC1_3203.1	1979	8e-25	1093 - 1152	100	60 / 60	plus
Harvest21	ABC24896	512	3e-25	350 - 409	100	60 / 60	minus	ABC24896
Harvest35	U35_22801	585	3e-25	104 - 163	100	60 / 60	plus

Contig Sequence (585 bp)

>U35_22801 585 Hv_44K_v2
GGGCTGAGGAATTCGGCCGGGGCCACTGGCAACTTCCCATATCCTCCTCGTGATAGCTTT
TATGAACTTCTTGAAGCTGTTGTCGACCAACCATCACCTTCTGCACCACCAGACCAGTTC
TCAGCAGAGTTCTGTTCATTCGTTTCCGCATGTATCCAAAAAAATGCTACAGATAGGTCA
TCTGCCCAAACCCTATCGGCTCATCCGTTCCTGAGCATGTACGACGACCTGAACATCGAT
CTCTCTGACTACTTCACGACCGCGGGATCGCCACTTGCCACCTTCAAGCAAATCGCGTTG
TGAGGTGACAAATGCTCGACCACGTGCCGTGAGCTGGAGGACAATCTGTAGAGCGAAGCT
AACTAAAGCAAGTGATTGGGGTTTTTCTTTACCTTCCTTTTGTTCAGAACTTGGGCTATG
ATGGTATGTTTGAACTGAGTATGACATTATTGGCTGCACTGCATAATCGTACAAAAAATA
CAGCATTCTAGCGTGAGTGAGGACCCAAGTTTTGCCTGGCTGCACGCCGGAACTCAACTG
CCCATTATGTATTGGCGTCCCGGTTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_22801 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None