barSeed - Barley Seed Development Database

Probe CUST_28677_PI390587928

Source Contig U35_20307

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28677_PI390587928	Hv_44K_v2	TGTACCATCAGACCCATTGTACATCAGACATTGATTCATTCAATTGCTTCCTTTTTCTTC	932	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.651	1.458	1.098	0.939	0.400	0.347
Raw	919.617	1233.185	825.871	1084.151	168.595	156.135

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66120.2	1890	2e-24	1822 - 1881	100	60 / 60	plus	ABC09693 ABC12980
JLOC1	JLOC1_43559.1	1898	8e-25	1790 - 1849	100	60 / 60	plus
Harvest21	ABC12980	1013	3e-25	22 - 81	100	60 / 60	minus	ABC12980
Harvest35	U35_20307	1013	3e-25	933 - 992	100	60 / 60	plus

Contig Sequence (1013 bp)

>U35_20307 1013 Hv_44K_v2
ACAAAGGGCTCAATATCCGCCGTCTAATATGTCAAATGCAAATGCAATGCAGCAGAGTTC
GTTATTTGGTGCTTTACAGATGGGATATGTGCCACCGTATAATGGCTTTGGCTACCAGCC
ACAAGGAACCTATGGACTTATGCAGTACCCTTTATCTCCGATGCAAAATCAAGCAGGCTT
CCAGAATATGGTTCAGCCTGTCAATCAAGGAAGCTCAATACGTGGCGTTAGTTCTGAACT
ATCCCCTAATTCAGTTGCTAGGTCATTCAATTCAATGCAGTTGGGCAGCCCTTATCCAGC
TGGGCCTGGTATGCAGTATCCTGGGTCATATCCTGGTGGTGGCATCAATAGTCGTCCTTA
CATGAATTCTCATAATTCCGTTAAAGTTCCTAATGCAAATGCTACATCTCCCACATCTTC
AAGTACCGGCAGCAACACTGGTCCTCAGCTAGAGGGTCCTCCTGGAGCCAACTTGTTTAT
CTATCACATCCCGCAAGAATTCGGCGACCAAGATCTAGCACATGCATTTCAGAGTTTTGG
TAGAGTATTGAGTGCCAAAGTATTTGTAGACAAAGCAACTGGTGCTAGTAAATGCTTCGG
TTTTGTAAGCTACGATTCACCTGCTCCTGCGCAGGCAGCCATAAGTATGATGAATGGGTT
CCAATTAGGTGGTAAAAAGCTGAAAGTACAACTCAAGAGAGACAACAGCAAGCACAATAA
ACTTTACTGACAGCAGCAGTGGAAACCCTCCAACACGATCAGGAAAAACCGGTACATATG
TGTCGCACAATTGATCGTTCGTCCCATTGTTTCTTCTGGCCTCCACCATGTGTCATCGTC
GGTGGCGGTTTGTTGTATCTTGGTTCAATTCAATTCAACATTCTTGAAAACTGCTAAGTT
GTTTTATTTCGTCTCAGCATAGTTGTAGCCTCTGTACCATCAGACCCATTGTACATCAGA
CATTGATTCATTCAATTGCTTCCTTTTTCTTCTATAAAAAAAAAAAAAAAAAA

Homology of Contig U35_20307 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g30980.2	443	9e-122	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi2g27260.1	460	3e-133
Arabidopsis v10	AT4G03110.1	441	1e-59	\| Symbols: AtRBP-DR1, RBP-DR1 \| RNA-binding protein-defense related 1 \| chr4:1376612-1379275 REVERSE LENGTH=441