barSeed - Barley Seed Development Database

Probe CUST_28672_PI390587928

Source Contig U35_20312

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28672_PI390587928	Hv_44K_v2	AAGCATCTCATGCTGATGTATATGAGAATTATCGAACCAATGCCAGCTGATTTACATCTG	965	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81840.1	2276	2e-24	1177 - 1236	100	60 / 60	minus	ABC02837 ABC17119 ABC35045
MLOC	MLOC_81840.6	1764	2e-24	886 - 945	100	60 / 60	minus	ABC17119 ABC35045
MLOC	MLOC_81840.5	2783	2e-24	1689 - 1748	100	60 / 60	minus	ABC02837 ABC17119 ABC35045
MLOC	MLOC_81840.4	2901	2e-24	1794 - 1853	100	60 / 60	minus	ABC02837 ABC17119 ABC35045
MLOC	MLOC_81840.2	2060	2e-24	1177 - 1236	100	60 / 60	minus	ABC17119 ABC35045
MLOC	MLOC_81840.3	2172	2e-24	1073 - 1132	100	60 / 60	minus	ABC02837 ABC17119 ABC35045
JLOC1	JLOC1_54437.6	1853	8e-25	1043 - 1102	100	60 / 60	plus
JLOC1	JLOC1_54437.5	2181	8e-25	1043 - 1102	100	60 / 60	plus
JLOC1	JLOC1_54437.4	2626	8e-25	823 - 882	100	60 / 60	plus
JLOC1	JLOC1_54437.3	2842	8e-25	1039 - 1098	100	60 / 60	plus
JLOC1	JLOC1_54437.2	1958	8e-25	820 - 879	100	60 / 60	plus
JLOC1	JLOC1_54437.1	1629	8e-25	819 - 878	100	60 / 60	plus
Harvest21	ABC13759	1008	3e-25	949 - 1008	100	60 / 60	plus
Harvest35	U35_20312	1025	3e-25	966 - 1025	100	60 / 60	plus

Contig Sequence (1025 bp)

>U35_20312 1025 Hv_44K_v2
AAAACTAGCGCACGAAACACCGCCTACCTACGCACCGCCGCCCTCTCCCTCCCTCTCCCA
GATCTAGATCGAGGCCACAGCCACCTCCGGTGCCCACACCGCTCGCGCCTCTCCTCTTCC
TCCGCCTCCGCTGCGTCCGGCTCCCGCCCAGTCCTCGCCCTCCTCTGTCTCCTCATCCTC
CACGGCCGTACGCACCGAGGCCGAGGCGCGAGCACATGTGAAGTCTTGATCTGGAGCCCG
ACGCCCAGCGAGAGCGGCCGCGAACTTAGCACCGTTAACCAGCCGTCCAACTCCGGCTCG
TCCGGGCCGCCTGAGTCGTCGTCGACGGCCGACGACTTGAGCAGCCTCACAGTCCCCGGT
GCGGCCGTCTCGATCCGGCTGCACGCGCTCGTGCTCCCCAAGGTCATGTTCGCGGACTGG
CTCGACATGGACATGGACATGGACTACAACACCGGTATGATGGCTCCGACTCCGAGCGCC
CTGGACGGGGCCTTCGGCGGCAGCCCGACGCAGTAGCCCTGTGGCGGGTCGACGAACGAA
TGAGGGGTCTCTGTTACATCTGCAACCAGAGGTACTGGAATCCACAAGCCGGATTACCTG
GCCACGGTGGACGTCGACCCCAGTTCAGCGACGTACTCCCAGGTGATCCACAGGCTCTCG
ACCACCCACATCGGCGACGAGCTGTATCACTCCGTCTGGAATGCCTGCAGTTCCTGCCAT
GGCGATGCCCCCACGAGCCGACGCTTATTGATTCTTCCTTCGTTGCTATGAGTATTTATG
GAGCAACGATGATCGAATGGACGAACAGTTGAATTTTAGCTGAGTTTGTAATGCTGATGA
TCTGGTGGTTGTTCACAGGTCCGGTCGTGTGTATGTGGTTGACACGGCGAATGATCTGAG
GGCGCCTGCCCTGCATAAGGCTGTCCAGGCCGAGGAGGCGAGGACATATTATTACTTTCA
CATGAAAGCATCTCATGCTGATGTATATGAGAATTATCGAACCAATGCCAGCTGATTTAC
ATCTG

Homology of Contig U35_20312 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None