barSeed - Barley Seed Development Database

Probe CUST_2866_PI390587928

Source Contig U35_22804

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2866_PI390587928	Hv_44K_v2	TATTGCCATTGCCATCACAACAGCGTTGCTCTTCTCTGCATGAACATCCTCAGTTGATTC	942	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.458	1.044	1.246	0.946	0.518	0.536
Raw	163.077	171.832	189.959	208.341	42.720	49.379

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15120.1	3047	2e-24	1793 - 1852	100	60 / 60	plus	None
JLOC1	JLOC1_10350.4	2598	8e-25	1542 - 1601	100	60 / 60	plus
JLOC1	JLOC1_10350.3	2708	8e-25	1542 - 1601	100	60 / 60	plus
JLOC1	JLOC1_10350.2	2715	8e-25	1549 - 1608	100	60 / 60	plus
JLOC1	JLOC1_10350.1	2605	8e-25	1549 - 1608	100	60 / 60	plus
Harvest21	ABC17388	1062	3e-25	943 - 1002	100	60 / 60	plus
Harvest35	U35_22804	1062	3e-25	943 - 1002	100	60 / 60	plus

Contig Sequence (1062 bp)

>U35_22804 1062 Hv_44K_v2
GTGACAGTGATGCTGAATCAGAGCTTGAAGATGTCGTCATAAATGGAAATGCCGCTTCAA
GTACACTAGAATCTCCTAAACACGATGATGCTAAACTAGAGCCAACAGCTTTTATTTCTT
TTGACTGGGAGAACGAAGGACCATATGAGAAAGCTGTTGAGAGGCTAATTAATGAAGGAA
AACTAACTGATGCTCTTGCTGTATCCGACCGCTGTTTGCGCAATGGAGCGTCTGATAAAT
TACTTCGATTGCTCATTGATCAAAGGGAAGAAAGAAATCTAGGCACAGGACAATTCCGTC
CATATGGATCCCGTAACTTGGGGAGTAATACTTGGCAGTATTGCTTGAGACTGAGGGATA
AAAAACTTGCAGCCCAGCTTGCTCTGAAGTACCTGAACAGTTGGAACCTTGACGCTGCAA
CCAATGTTCTAACTATGTGCATCTGCCACTTACCTGAGAATGATCCTATGCGGAGTAAGG
TGTTACACATGAAGCAATCTCTGCAGCGGTATGGTCATATTTTGAGTGCTGATGACCATT
ACACAAGATGGCAAGAGGTCGAAGTTGATTGTGAAGATGATCCAGAGGGGTTAGCACTTA
GGCTTGCTGCCAAAGGAGCTGTATCTGCTGCTTTACAGGTTGCCGAAAGTGCCTCCTTGT
CAATTGATTTGCGGAGGGAACTGCAAGGCCGCCAGCTTGTCAAACTTCTCACCACTGATC
CACTTAATGGTGGAGGCCCAGCCGCGGCATCACGATTTCTATCGACCTTACGAGATTCCA
ATGATGCTCTTCCTGTTGCCATTGGTGCCATGAAGTTATTACCTGACCTGCGCTCAAAGC
AGCTTCTTGTGCATTTTTTTCTCAAACGCACAGTTGGGAATTTGTCAGATGCTGAGATTG
CTCGACTTAATTCATGGGCGCTGGGTCTTCGTGTTCTTTCCTTATTGCCATTGCCATCAC
AACAGCGTTGCTCTTCTCTGCATGAACATCCTCAGTTGATTCTGGAAGTACTATTGATGA
TGAAGCAACTCGAGTCTGCATCTCTGGTTTTGAAAGAATTTC

Homology of Contig U35_22804 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g40990.3	2175	7e-177	protein\|expressed protein
Brachypodium v1_2	Bradi2g42430.1	2435	0.0
Arabidopsis v10	AT2G25730.2	2487	3e-129	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages. \| chr2:10956751-10972729 REVERSE LENGTH=2487