barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_28669_PI390587928Hv_44K_v2GCGTACTATTTCTACTTGGGTATAAGTAGCCAATTGATCCCAGAACAAGGGGTCCTTGCA864GeneList: royalblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 4.9294.2830.7320.9550.7740.690
Raw 44.40065.4768.94118.8423.0253.255



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_81050.29412e-24882 - 94110060 / 60plus ABC15316
MLOCMLOC_81050.116692e-24890 - 94910060 / 60plus ABC15316
JLOC1JLOC1_53931.111268e-25899 - 95810060 / 60plus
Harvest35U35_203159243e-25865 - 92410060 / 60plus



Contig Sequence (924 bp)

>U35_20315 924 Hv_44K_v2
GACGGACCCAACGGCCACCGAGGTCGCCCACAGCCGCCGCGCACGCTATATTATAGCCGG
AGCAGCGTGCGCGCCTACGAGCACTGCACGGTCCCCCTCTCCCTCAGGTTCAACAACCAC
GAGCCACGATAGTCGCCGTCGTCGGGCCTCTGCTCTCCGTCTCCTCCCCACTGCGGCCGG
ACACCCCCGGGAGCCCGTGATCTGCGCTGCACTGTGCCATGTCGTCGTCATCCTCCTCCT
CGGGCGGGGCGGGATCCGCGCTGGGCGGCTCCCACGCCGGCCTCGCCCTCGCCGCCACCG
CCATGGCGCTATCCGGCACCCTCGTCCTCTTCTCGCTCTGCCGCGCCAAGCAGACGGACC
ACCACCTCGTCTCCTCCGACGCCGCCGTCACGTCCCCGTCTCCCGCTCGACTCCGGCCCT
GCCTCTCCTCCTCCGAGAAGCGGAAGCGGGAGAAGGCGAGGCGCGGGAGCATGAAGCGGG
TGCGCTTCGCGGCCGACGTCGTCGACCACGGCCCAGCTCGCCCGGCGCCGGAGGAGGAGA
CGGCGGCGCCCGAGCCGTCCTGCAGGGGCGCCGCGATGCCGGCGAACCGGGAGGCGCTCT
ACCGCGGCATGCTCCGCGGCCGCTCCATGCTCAGGACCGCCTGCTCCTACTAAGCTACCG
GCGTCAGTTAACCCCGTCGTTTAATCCTTACTACACCCATCCCGTCCTCGTCTTAGTCCG
TCGGAAGCTGCCAGCGCCTTTCGCAATTCTCGTTCATTAGCGTCGTCGCTGATTGGGAGA
TTTTTGTAATTAGTGAGCATCCCGTACGCGCGAGCGATCTGTGTGGTGCTTGTCCTTAAT
TGTTCTACCCGTTGTCGTACGTGTGCGTACTATTTCTACTTGGGTATAAGTAGCCAATTG
ATCCCAGAACAAGGGGTCCTTGCA



Homology of Contig U35_20315 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None