barSeed - Barley Seed Development Database

Probe CUST_28668_PI390587928

Source Contig U35_20317

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28668_PI390587928	Hv_44K_v2	GCCATTTGATGAGTCAACTAGAAACTTCATAGGTTTTTAGTACTCCAGTTATGTTGTCAT	1216	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366474	3001	2e-24	1370 - 1429	100	60 / 60	plus	ABC07248 ABC38206
MLOC	AK358258	2223	2e-24	2094 - 2153	100	60 / 60	plus	None
MLOC	MLOC_48427.1	407	2e-24	165 - 224	100	60 / 60	plus	None
MLOC	MLOC_54551.1	354	9e-22	297 - 354	98	57 / 58	minus	None
JLOC1	JLOC1_31107.1	410	8e-25	167 - 226	100	60 / 60	plus
Harvest35	U35_20317	1352	3e-25	1217 - 1276	100	60 / 60	plus

Contig Sequence (1352 bp)

>U35_20317 1352 Hv_44K_v2
CCCACGGCTAGGGTTTGGGGCGAGACCTCGTCTCCACCATCGGCGTGCCTCCGACGAGCT
CCGGCGGCCATGGCCGATGCGAAAGACGCTGTCGAGCTCTTCCCCAACCCCATCGCCAGC
GACCCGCACCCCCTCTCGCTCCACCCCCATAGCTCGTTGACCAGCCTGCTCCGTCAGGTC
GTGGACGGCGAGGCTGGGCAGGGAAGAGGAGGTCGCTGATGAGGTTCGCCGGTCAGACAG
GTGCAAGGGCGCCGATCTCCCTCCTCGTGTTCCCGGACGACGCGCAAGCCATCCTTCCCT
TTCTTCCGTGCGGCTCTACCCTGTCCTGACTTCTCCTCGCCTCGCCGCCGTCCGCTCGAC
CACAGCTCGCCCCCGTCCACAAAGGAGACAAGTAGCAGCAGCGCCCCAAATCGAGGGAGG
GAGGATCCTCTCAGGTCAAAAAAGCAAGATTTAGATGATATTTCGCAACAATGTCAATGT
TAGATTCTGATTCACCAACAGTGCTCTTTAGGTTACAAAGGATTTGAATTGAGCGATTCA
ACTCTGCCTTCATCAGTACAAACAATTCATAAAAGAGATGAATTGGACTAATCTACTCAG
CATCTCATGACTTTAGAAGCACGAGTACATGAAAACTGATATCCACTAGGATTGCTCTGC
TCCTGTTGACATGCGAGAGCTGTTTGAAGCGAACTGGATGGTTGTCACCACTGATTAAGC
TGCCGAGCCCAAGAATTGTGTCAGACTATTGGCCAAGCTGTTCAATTTCTCAACACCGTT
CAGTTTTGTCATTGGCCGCCCTTGCGTACACTCAACAGAGAAGGGTATCTATCCTCAATT
TCCTACTCTACATCTACTCATATAATTGATCTCTAATATCCTGTACAAAACGTTAGTGGT
GGCTCGACAATTTAATAAGCCAAATTTGTGGGAAGTGGAATGCATGTGTAACCAAACTGG
GCTGGACCAATCTTGAGGTTTTCCACCAATTCTTTTAAAAATGGTCCTTAAGCAAGGCAC
TGGGAAATCGTGGATAGCTGATATATCCAGCAGGTATGTGCACATTCTGCTATAATCTAG
AGTAGGGAGTGCTCAGCATAAATTGTGAGATCTGAGCTGGTACATAAAATAAACCAAGAT
AGTCTTGTCTTACGTGCAGATGATTTTATTATGGCATACTGTTCAGCATAATTCTGACTC
TAGAATGTCTATATTAGCCATTTGATGAGTCAACTAGAAACTTCATAGGTTTTTAGTACT
CCAGTTATGTTGTCATTTGTATATCTCCAGATATAAACTTCATAAATTTATATCGTGAAT
CATTTTTATGCTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20317 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None