barSeed - Barley Seed Development Database

Probe CUST_2865_PI390587928

Source Contig U35_22805

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2865_PI390587928	Hv_44K_v2	CGGAAAAGGTGCACTTGAACTGTGTGTTACTCAGATGAAGGTTGTACTAAGCTCCCTACA	556	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15120.1	3047	2e-24	2415 - 2474	100	60 / 60	plus	None
JLOC1	JLOC1_10350.4	2598	8e-25	2164 - 2223	100	60 / 60	plus
JLOC1	JLOC1_10350.3	2708	8e-25	2164 - 2223	100	60 / 60	plus
JLOC1	JLOC1_10350.2	2715	8e-25	2171 - 2230	100	60 / 60	plus
JLOC1	JLOC1_10350.1	2605	8e-25	2171 - 2230	100	60 / 60	plus
Harvest21	ABC17389	620	3e-25	557 - 616	100	60 / 60	plus
Harvest35	U35_22805	620	3e-25	557 - 616	100	60 / 60	plus

Contig Sequence (620 bp)

>U35_22805 620 Hv_44K_v2
TACTATTGATGATGAAGCAACTCGAGTCTGCATCTCTGGTTTTGAAAGAATTTCCATCCC
TGAGGGATGACAAGTTAATCATTGCTTACGCTAAGAAAGCAATCTCCGTCAATATCGATT
CTACTCTTAGGGAACCGCGACAAACCATCTCTGCGGCAAGAGAAAAACAAAAAAAGGTTG
CCATACCAGCTAAAACAAATTTTGTACAGAGTTTTGGCAACTTTCAGAGAGAAGCACGTA
AAGCATTCTCATGGGTGCCCCGTGACGGTGGCACCAAACCCCCCCCGAAAGATATCCCTC
GGAAAAGAAAGAGTTCAGGCTCAGGAGGTGATAGGTCCTCTTGGGAAGCGATGCCTGGTG
TACAGGAGGAGCAGACACCTGTATACCCTTCTGAAGGACAAGATAGACTTCCTTTTGTTT
CTGCTCCTGAGGAGTGGGTGCTTACCGGAGAGCCTGACAGGGATAACACAACTCGTTCAT
GTCATAGATATGAATCCTCTCCAGATATTGCACTATTCAAGGCATTGCTTTCACTGTGCA
CCGATGTGTCAGTAGCCGGAAAAGGTGCACTTGAACTGTGTGTTACTCAGATGAAGGTTG
TACTAAGCTCCCTACAGTTG

Homology of Contig U35_22805 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g40990.3	2175	6e-90	protein\|expressed protein
Brachypodium v1_2	Bradi2g42430.1	2435	5e-101
Arabidopsis v10	AT2G25730.2	2487	1e-59	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages. \| chr2:10956751-10972729 REVERSE LENGTH=2487