barSeed - Barley Seed Development Database

Probe CUST_28658_PI390587928

Source Contig U35_18008

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28658_PI390587928	Hv_44K_v2	ACATGGATATATGTACATTGTGGTTATAAACCGTCTCCGTGAACCGTTGTGGTTAAAAAA	1636	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.872	1.462	1.244	0.932	0.351	0.438
Raw	9857.473	24752.443	18684.067	21718.973	2920.213	3960.410

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4855.2	1199	9e-22	1111 - 1165	100	55 / 55	plus	ABC08243
JLOC1	JLOC1_3078.1	2295	5e-22	1037 - 1091	100	55 / 55	plus
Harvest21	ABC08243	1684	3e-25	1614 - 1673	100	60 / 60	plus	ABC08243
Harvest35	U35_18008	1707	3e-25	1637 - 1696	100	60 / 60	plus

Contig Sequence (1707 bp)

>U35_18008 1707 Hv_44K_v2
CGCTCTCTCTCTCTCTCTCTCTCTCGTCTCCACAGCGGCTGCTTGACTGGAGTCAAGAGT
CTCGAGTGCTGCTGACCCGCCGCCTTCTCCGGCCGCTTGCCCGTGCCGCCATGGACAACA
GGGAGACGGCGACGGAGCCTCGCCACCCGCTCCTGCAGGCCGTTCTCGACGGCGACCTGC
GCCTCATCAAAGAGATGGCAGGCGTCGTCGCGGCGGACGCCGGCGTCCGGGCGCGCGCGC
TGAGCGTGGCGGCCATGGAAGGGCGGCTGGACATCTGCATGTGTCTCGTCGAGGATCACG
GCGTCGATGTCAACCAGCGCACCTTCACAGGTGACACTGCTCTGGCCATCTCCGCGTCTT
ATGGCACGCCCGCTATCACGAGATATCTTCTGGATCGTGGTGCTGTTCCAACTTTGGTTG
GTGCCCTGTGGCCACCTCTTCATGCTGCTACAAGCAATGGACAATGTGAGATAGTGAAAA
TGCTGCTTTCAACTGGAATTGATGTTGATCATCTCGATTCTGAGTACGGGACCGCATTGC
ATGCTGCCGCTACTAATGGTCAAGATGGCTCAATGAGTATTTTGTTGCAGCATCACGCAG
ATCCTAATAAGGTTTTCCGCCTTCAAAGTACCCCGTTAAGTATGGCCATAATTTCTGAAT
CGCTGGAATGTGTGAAGCTACTCGTTAAGGCTGGCGCTGATGTGAATAAAATTGACTATA
CTGGTGTTACTTACTTGATGGTAGCAGCAACCAATGGCTTATCTGATATCATGAAGTGCT
TACTGGATGCTGGGGCTGACCCAGATGTTGATGATGGATTTGGTACAACTCCAATCGAAA
TTGCCGCCCTCCGAGGCAGATGGGATATGGTTGAGATGTTATTTCCTTTAACTTCTCCCA
TTTCAACATTGCCGGATTGGAGTGTTGATGGAATTATTTCTCATGTGCAATCTTTTGGTT
TGAAGCCGAGGGATATACATCTATGTGAAATGAAAAGAGCTGAACTAAATTTACAAGCTG
CTGAGGCTTTTAAGAGAAAGGAATATACGATAGCAGGAGAGCTATATACTTGTGCAATGA
GTTTTCAGCCCAGTTCAGAAGATCTTGCAACCCTCCTAGCAAATAGAAGTTTCTGTATGT
TGCACGCGGGAATAGGAAAAGATGCTCTCTCCGATGCGGCTAAGTGCACGGTGCTACGAC
GTTTTTGGCCCAGAGGTTACTATCTACTAGGAGCAGCCTTCATGTTGCTAGAGGACTATG
GAAAAGCAGCTCTGACTTTTGCAACTGGCTTGAAACTGGACCCTACCGATGCCGATATTG
CAAATGCTTTAAGGGAAGCCCGAGCGGCGGCGAGGAATCCTCCTCGCACCGGGGGGCTGG
GGCGCCTTAACCCATTTGGAATCAGACGCTCCTGGAGAGACTGAGGCTCTGTTTCGTTGC
TATCTCCAGTCCAGGGTATGCTTGCCTGTTATCCTCTTTTCCTATGTCCAGTCCAGGGTA
TGCATGCCCCGTTATTATTCTCTGGAAAGATTGAGACTCTGTTTCGTTGCTGAAGACTCT
GTTTAGTGTTGAACCGTCCAAGACTGCCAATCTCGTATGCTATGTTGTAAGACGTCATGG
GGCACTGATGGTGTCAACATGGATATATGTACATTGTGGTTATAAACCGTCTCCGTGAAC
CGTTGTGGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18008 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g03750.1	440	4e-133	protein\|ankyrin, putative, expressed
Brachypodium v1_2	Bradi2g13535.1	405	5e-105
Arabidopsis v10	AT3G04710.1	456	3e-69	\| Symbols: TPR10 \| ankyrin repeat family protein \| chr3:1278229-1280942 FORWARD LENGTH=456