barSeed - Barley Seed Development Database

Probe CUST_28654_PI390587928

Source Contig U35_20322

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28654_PI390587928	Hv_44K_v2	CTGCAATTTGCAAAATGGTCTACTGTTACAGGATTGATAAGTCCTCTTCAGTTTCAAAAA	733	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.564	0.751	1.007	1.540	1.019	1.152
Raw	50.852	109.937	125.945	289.669	69.907	86.835

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76060.1	781	9e-22	159 - 213	100	55 / 55	plus	ABC12492
JLOC1	JLOC1_50734.1	740	5e-22	207 - 261	100	55 / 55	plus
Harvest21	ABC12492	465	3e-25	13 - 72	100	60 / 60	minus	ABC12492
Harvest35	U35_20322	805	3e-25	734 - 793	100	60 / 60	plus

Contig Sequence (805 bp)

>U35_20322 805 Hv_44K_v2
GAAACCACCCACCATTTTCGTACACCACGCGAGATCAGGGCACCGAGAGGCCAGCCATCC
GCGGCTCCACGGAACCAAGAAGCCCGAGAGCAGCCATGGCCGGCGCCTCCGCCACCAGCA
CCCGCAAGGGCGGCATCAAGGCCTACTGGAAGCACCGCGGGTACGACCGCCTGGACGCGG
CCGCCGCGCAGCGCCGCCCGCCCCTCGCCAAGGCCGAGCTCGGCGCCGGGAAGCCGGCGA
CCGCGGGGCGGCGGCGCGGGTGGCGCGTCCGGCGCCGCGGCCTCGGGCGGCGGCTCCTGC
GCGCGCTCTCGCCGCGGCGGCTGCTGGCGCGGCTCCGGGACGCGTACGTGAGCGCGATGC
TCCGGCTCGCGTCCTCCGCCGCCGTGGGGTACGGCTCCGCCCCCTTTTGCGCCGGCGCCG
AGCCCTTCGCGCGGCCGCGGCCGCTCAAGGAGTACGACGAGAAGGTGCTGGTGGAGATGT
ACCGGTCCATCCTGGCGCGCGGCGGCGTCATCCCTCTCTCCGGCGACGCCGCGCTGGTGG
TCGGCCCCGCCCCGATGGCGATGCCGGCCGCGGCCACGGTGGCCTGACAGCCCGCCCGCC
CATCGGCCGCCGATCCGCGCGGCGCGGACGCTGGCTTGTCACGCAGTTTGCACCTCTGTT
TCGCCGCGCACAACATGCGAAGTGTGCTCCTGTCTAGCGTGTATGGTAGAAGCTCTGTGG
TACTACGTCTTTGCTGCAATTTGCAAAATGGTCTACTGTTACAGGATTGATAAGTCCTCT
TCAGTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20322 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None