barSeed - Barley Seed Development Database

Probe CUST_28650_PI390587928

Source Contig U35_20326

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28650_PI390587928	Hv_44K_v2	GTGTAATTGGAACTGTTGCAGGGGTCAAATTTTGTGTACAACCCGTTTTTATTTCAAAAA	562	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.282	2.138	1.230	0.718	0.237	0.201
Raw	1495.230	1493.844	760.777	624.321	87.183	76.980

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45878.1	497	3e-22	3 - 58	100	56 / 56	minus	ABC13727 ABC31624
JLOC1	JLOC1_29744.1	496	1e-22	2 - 57	100	56 / 56	minus
Harvest35	U35_20326	634	3e-25	563 - 622	100	60 / 60	plus

Contig Sequence (634 bp)

>U35_20326 634 Hv_44K_v2
GCTGAACACATCCAGGCAAACTACTAGACACTAGCATGGAGATCAAGCCAGCACTCCTCC
TTGTTGCCTGCTTGTTATTGGGCATCAGCAACAGAGGCACTGCAGCAACATGCAGAACTT
CAGATATTGTTGTCCAGACAGAGAGTTGGCCCGATCCGGCAGGAACGCCAGTGTACTATG
TGAATCTGGTGAATAACTGCGGCTGCACGCAGAAGAACGTGAAACTGGCATGTCCAGGGT
TTAACTCTTCCGTCGAGGTCTACCCGGCCGCCGCCATCAAGCCGGACGGCGACGGCAAGC
TCTGCTCCCTCTACAGCGGCGCACCGGTTAGGCCTAAACAGACGATCTTCTTCAACTACC
GGTACACGAGTACCAAGTTCAGCTTCGAGCCCGTCTCCTCCACCATTGTATGTTAGACAA
TGAGAATAAATGACATCTTCTTCTTTTTTGCAAAAACCGAATAGCGAATAAATGATATCA
TGGTCATATCAGAAATATGTTTCCATAGTAGTGCCAAAAAGATCCATCTCTATTCAGGTA
ATAAATAAATAAAAGATTTGATGTGTAATTGGAACTGTTGCAGGGGTCAAATTTTGTGTA
CAACCCGTTTTTATTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20326 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None