barSeed - Barley Seed Development Database

Probe CUST_28644_PI390587928

Source Contig U35_32303

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28644_PI390587928	Hv_44K_v2	CCAACCTCTTGGTGAATTGAATATCGAGTTCAGCACCTCGGAACAGGTGTATGATTCATA	453	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376104	2862	2e-24	394 - 453	100	60 / 60	plus	ABC04984
MLOC	MLOC_62199.3	2236	2e-24	1749 - 1808	100	60 / 60	minus	ABC04984
MLOC	MLOC_62199.2	1975	2e-24	1749 - 1808	100	60 / 60	minus	ABC04984
MLOC	MLOC_62199.1	2340	2e-24	2171 - 2230	100	60 / 60	minus	ABC04984
MLOC	MLOC_62199.5	939	2e-24	741 - 800	100	60 / 60	minus	None
Harvest35	U35_32303	513	3e-25	454 - 513	100	60 / 60	plus

Contig Sequence (513 bp)

>U35_32303 513 Hv_44K_v2
AACAGAATGGAAGCTCCCTCCGATCGAGCACATCACAACGCATTTCTTTCTTCAATCGTC
CGGCACTCATCCTCTACTCCCCATGGACACCGACGGCCCCGACGGCTGGGTCTGGGTGCG
CCGGCCGGCGGAGGAGGGAGCGCGAGCGCGGCGGCCATGGACGGCCGACGAGGAGGAGCG
GCCGCTCAAGGTGGCGTTCTCGTCGCCGGCCGAGTACTTCACGGACGCGGCGCCGATCGG
CAACGGCAGCCTCGGCGCCATGGTTTGGGGCGGGGTCTCCTCCGACAAGCTCCAGCTTAA
CCATGATACACTATGGACCGGCGTGCCAGGGAACTACACCGACCCAAAGGCGCCGGGTGT
TCTTGCAGAGGTGAGGGGATTGGTCGACCAAGGAAGGTTCGCCGACGCCACGGCTTCAGC
CAAGGGCCTTTTCGGTGGACTGTCTGAGGTATACCAACCTCTTGGTGAATTGAATATCGA
GTTCAGCACCTCGGAACAGGTGTATGATTCATA

Homology of Contig U35_32303 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g19334.1	816	3e-54	protein\|alpha-1,2-fucosidase, putative, expressed
Brachypodium v1_2	Bradi1g28366.1	819	2e-51
Arabidopsis v10	None