barSeed - Barley Seed Development Database

Probe CUST_28643_PI390587928

Source Contig U35_18010

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28643_PI390587928	Hv_44K_v2	TTGCTTCATTGTTCTTCAAGTTCAAGCGAGAACGGAGTCAATGGACCACGTTCAAAGCCA	670	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248677.1	3548	2e-24	2198 - 2257	100	60 / 60	plus	ABC11876 ABC15312
MLOC	MLOC_10989.7	2977	2e-24	688 - 747	100	60 / 60	minus	None
MLOC	MLOC_10989.6	3034	2e-24	823 - 882	100	60 / 60	minus	None
MLOC	MLOC_10989.1	3375	2e-24	1093 - 1152	100	60 / 60	minus	ABC11876
MLOC	MLOC_10989.2	3375	2e-24	1093 - 1152	100	60 / 60	minus	ABC11876
MLOC	MLOC_10989.3	3379	2e-24	1093 - 1152	100	60 / 60	minus	ABC11876
MLOC	MLOC_10989.4	3472	2e-24	1146 - 1205	100	60 / 60	minus	ABC11876
MLOC	MLOC_10989.5	3476	2e-24	1146 - 1205	100	60 / 60	minus	ABC11876
JLOC1	JLOC1_7238.2	3231	8e-25	2268 - 2327	100	60 / 60	plus
JLOC1	JLOC1_7238.1	3193	8e-25	2230 - 2289	100	60 / 60	plus
Harvest21	ABC11875	1133	3e-25	300 - 359	100	60 / 60	plus
Harvest21	ABC11874	942	3e-25	671 - 730	100	60 / 60	plus
Harvest35	U35_18010	1024	3e-25	671 - 730	100	60 / 60	plus

Contig Sequence (1024 bp)

>U35_18010 1024 Hv_44K_v2
TACTGAGACGTTTGCCATGGGGCTGAACATGCCTGCAAAAACAGTTGTATTCACATCTGT
CAAGAAATGGGACGGTGATAGTAACCGCTATATTGCTTCTGGAGAATATATACAGATGAG
TGGAAGAGCTGGTCGACGTGGCATGGATGCACGTGGCATTTGTGTTATAATGATTGATGA
GAAGATGGAAATGAGTGTTATCAAGGACATGGTGTTAGGTAAACCAGCGCCTCTCATCAG
CACTTTCCGACTGAGCTACTATACTATTCTGAATTTACTGAGTCGTGCGGAGGGCCAATT
TACTGCTGAACATGTGATCCGGAATTCATTCCACCAGTTTCAATATGAAAAGGCATTACC
TGAAGTCGTTCAGAAGATTACAAAGTTGGAAAATGAAGCTACATTGCTGGATTCTTCTGG
AGAGAATGATCTTGCCGAGTATCACAAGTTAGGGCTTGATATATCTGAACTTGAAAAGAA
AATCATGTCTGAGATTATTAGACCAGAGAGAGCTTTGTTATATTTGGTCCCTGGAAGGCT
GGTTAAAGTCAGAGATGGCTCAACAGACTGGGGGTGGGGTGTGGTCGTAAATGTTGTGAA
GAAACCTCCAGCATCTAGTGCTCTCCCCCCTGCATTAAGTGCATCTCGCAATAACTATAT
AGTGGATACCTTGCTTCATTGTTCTTCAAGTTCAAGCGAGAACGGAGTCAATGGACCACG
TTCAAAGCCACGCCCACCTCGCCAAGGGGAGAAGGGAGAAATGCATGTGGTGCCTGTACC
ATTACCTTTATTATCTGGTCTAAGCAGTGTTAGAATCAGCATTCCAACTGATCTACGACC
ACCTGAAGTGAGACAAAACATACTCTTTGCAGTTCAAGAACTAGGAAAACGTTACCCCCA
AGGGCTTCCAAAGCTACATCCAATTACGGACATGGGTATTGAAGAACCTGAATTAATTGA
CTTGGTTCATAAACTTGATGGTCTCGAGCAGAAATTATGTTCTCATCCACTTAATAAGTC
TGAT

Homology of Contig U35_18010 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g07500.2	971	4e-169	protein\|DSHCT domain containing protein, expressed
Brachypodium v1_2	Bradi4g24170.1	1006	1e-173
Arabidopsis v10	AT2G06990.1	995	1e-128	\| Symbols: HEN2 \| RNA helicase, ATP-dependent, SK12/DOB1 protein \| chr2:2895135-2900909 FORWARD LENGTH=995