barSeed - Barley Seed Development Database

Probe CUST_28640_PI390587928

Source Contig U35_32305

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28640_PI390587928	Hv_44K_v2	AATCAAGCAGGTTGTTCAATCACCTGAGAATGATATTGTCTATGTTGTTGGGATTGCTGG	462	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249827.1	3344	2e-24	676 - 735	100	60 / 60	plus	ABC07198 ABC49697
MLOC	MLOC_59946.2	1618	2e-24	744 - 803	100	60 / 60	minus	ABC07198
MLOC	MLOC_59946.1	1652	2e-24	778 - 837	100	60 / 60	minus	ABC07198
JLOC1	JLOC1_39053.3	1633	8e-25	762 - 821	100	60 / 60	plus
JLOC1	JLOC1_39053.2	1512	8e-25	662 - 721	100	60 / 60	plus
JLOC1	JLOC1_39053.1	1282	8e-25	642 - 701	100	60 / 60	plus
Harvest35	U35_32305	525	3e-25	463 - 522	100	60 / 60	plus
Harvest35	U35_18076	784	3e-25	685 - 744	100	60 / 60	plus

Contig Sequence (525 bp)

>U35_32305 525 Hv_44K_v2
TCGATCTCTGTTGGCCTACTAGAACAAACCCGCTATGACTCCAATCCCCGAGCCCGTGCA
GTAAACGACGCTACCCAGACGCCCCTCCCTCCTCCCTCCTCTCAGATCAGAGGAAAATGT
GATCGCTTCTCTTGATCTTCGTTCAGGAGATATATTTTGGCGACATGTCATTGAGAAGAA
TAACCCCATTGATCAGCTTAGTCTATCAGCTGGAAAATATGTTGTTACCCTTTCTTCGGG
AGGTAGTATATTGAGGGCATGGAATCTTCCTGATGGACAGATGGTCTGGGAAACCAATAT
TCAAACTTCCTCAGCATCAAAGTCGTTGCTGCATGTTTTGTCAAACAGTAAAGTGGTACA
AGATAATTTGGTTTTAGTTTTGGCTGGACAATGGATTTATGCTATATCAAGCATTGATGG
ACTCATTTCTTGGGGAAAGGAGTTCACACTTGACGGCCTAGAAATCAAGCAGGTTGTTCA
ATCACCTGAGAATGATATTGTCTATGTTGTTGGGATTGCTGGTTC

Homology of Contig U35_32305 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g14170.1	990	4e-75	protein\|expressed protein
Brachypodium v1_2	Bradi2g31830.1	990	4e-73
Arabidopsis v10	None