barSeed - Barley Seed Development Database

Probe CUST_2863_PI390587928

Source Contig U35_22807

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2863_PI390587928	Hv_44K_v2	GTTTGCGTGCTCGTGTTAATTTTTGTCGAAATGACGTGTCACCAACTTGTGCCTTCTCGA	1336	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.439	0.541	1.111	1.641	1.033	1.278
Raw	40.864	80.539	143.150	332.563	72.637	97.776

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12255.1	2307	6e-24	41 - 99	100	59 / 59	minus	ABC40498
MLOC	MLOC_12255.2	1384	6e-24	41 - 99	100	59 / 59	minus	ABC40498
MLOC	AK373338	1664	3e-22	1549 - 1607	98	58 / 59	plus	ABC40498
JLOC1	JLOC1_8216.2	1339	3e-24	1281 - 1339	100	59 / 59	plus
JLOC1	JLOC1_8216.1	1311	3e-24	1253 - 1311	100	59 / 59	plus
Harvest35	U35_22807	1396	3e-25	1337 - 1396	100	60 / 60	plus

Contig Sequence (1396 bp)

>U35_22807 1396 Hv_44K_v2
GGCTGCAGGTGGAGGGCACGTCGACCTGGCGGCGGCGGCGGCGGCCATGGCGGACGCGCG
GGGCCTGCACGCCATCCGCGCCGCGCTCGAGGACCTCGAGGGCCACCTCCACTTCCTTCG
TGATGTTCAGTTACAACAGCGTGCCAACCGAGATGCCGCGATTGCTAGGGTGCAGCAAAG
TCGCATTCTCCTTGCTGCAAGGTTGGCTGAACATAGAGGAAAGGGGCATGGAATCATTGA
GGAAGCCTTAGGTTTCGTGGGTGATGTGCGTGACAAGAGCCATTTTGTCTCGCCGGAAGA
TGTGTATGGAATGCACAGCCAATTAGGGGAAGATGAGGAGGACCGCAGGGGACATGGTTC
AAATATGGTGGTGCGTGTGGTATCCTGCAGTTTTGCTTTAGCCAAGAACATTTTAAGATT
CGAGAGGATGGGTAGTGTGCTGGGTAATGCTACTGTGTTTGCAGTAAGTATGCTCACATT
CTTGCAGCTTCACCAATTGGCCTCTGGTAAACAAACACCAGCAGTCCAATATAGGAGAAC
CGACAATGGTTCTCTTTCTGGAGGGTCAAGAAAAGACAGTAAAGGAAAGCATCTGGAAGT
GTTATTAGCTAGAGGTTGATGAATCATCAGATACAGGAAGCTTTGCTCTCTTTTGAGTTT
TGGTCGGTTTTGTTAGGTTACTAGGCACTAGCCATTGCATTCTTTTGGATGGGCTGGTTT
ACAGTCTTACCATCATCGTTAGAAGCTGTACCACACAGGATGTAAATGGTTTGAGATTAG
CAATAGATGCACTGGAAGAATCTGCAAGTCGGTTCCCTTTTCTTCAACTAACCACAACAA
CTGTATGGTACTAGGGCAACATATCTCGTTCTGGGGCTGCGGCATTTGAATCTGTTTGTT
TGGTGACACAAGTCATGTTGCAACCATGGTTATTACTCTCCAACATCTATTGGGACGAAC
AAGCCAATGTTCCATCCCCAGCAGCTGGGGATGCAAATCAGGAAGGACCTTGTGACGTTA
TGCTTCATCCGTTTGCCTCTTCGACCAGTGCCATGGCCCAGAGGTTCTTGCTTGCTTGAT
AACTTCACTTCGTGATTTGTATATAACTGAGACAAAGTACAAGCACACAAAGTACAATGA
GGTGCATGTGCCATAGCCTTCAAAGGGTTGAGTTGTGAATTGCTCTTTCTTGTGCCTTGT
TCTTCACACCAGTCAGGCACCACTTTTCCTTTGCATATGTCCCCCTTCTTTCGGAGATGT
GAGCTACGGTGATGTTCTCTATTGCTGCTTGCTGGCTTTACTTGTTTGTAGCTTCAGCCA
CGGTGCAGCGTAGATTGTTTGCGTGCTCGTGTTAATTTTTGTCGAAATGACGTGTCACCA
ACTTGTGCCTTCTCGA

Homology of Contig U35_22807 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g30930.1	264	5e-63	protein\|expressed protein
Brachypodium v1_2	Bradi1g39277.1	171	1e-77
Arabidopsis v10	None