barSeed - Barley Seed Development Database

Probe CUST_28637_PI390587928

Source Contig U35_32307

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28637_PI390587928	Hv_44K_v2	AGCTCAGATGCCTACTGCTACTGCTACTGCTGCAGCTGCAGGTTTCCTGAGCATCGACTG	229	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362499	3231	2e-24	197 - 256	100	60 / 60	plus	None
MLOC	MLOC_39308.2	957	2e-24	305 - 364	100	60 / 60	minus	None
JLOC1	JLOC1_25622.2	857	8e-25	497 - 556	100	60 / 60	plus
Harvest35	U35_32307	516	3e-25	230 - 289	100	60 / 60	plus

Contig Sequence (516 bp)

>U35_32307 516 Hv_44K_v2
ATATAGATATAGATATATGCTTGCTTGCTTGCTTGCTTGCTTAGCAACCAAGTAACCATT
CAGACAGGGCGACTACTGGACTGCTCCGGCATTCCATGGAGATGGAGCAGAGCAGCCGGC
CGGCTTCCACTCCCCCAACGCAACACCGATCCTCTTGCTCTGCTTATTTACGTCTTGCTG
TGCTTTACGCCTTCTTCTTCTTGTGCTCCTCCTTGAACGCCGTCTCCCGAGCTCAGATGC
CTACTGCTACTGCTACTGCTGCAGCTGCAGGTTTCCTGAGCATCGACTGCGGCGGAAGCG
GCAACTACACGGACGCACGGGGCCTGCGCTGGACCTCCGACGCCGGCATCATTGCCACCG
GCACACCAGTCTCAACCCCTTCCTCTTCCTCTTCTCCTAAACAAAAGGAAGACACGCAGT
ACACCACCCTGCGCGCCTTCCCGGCGGACGGCGCCAAGCACTGCTACGCGCTCCCCGTCG
CCACCCGCGCGCGCTACCTNGTGCGTGCCACATTCC

Homology of Contig U35_32307 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None