barSeed - Barley Seed Development Database

Probe CUST_28634_PI390587928

Source Contig U35_18015

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28634_PI390587928	Hv_44K_v2	GCCGACGATGGCTTTAGTGCTCACACAATGAAAACGCATTTGAATATACAGTCACTCGGA	1132	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.760	1.481	1.152	0.847	0.600	0.691
Raw	192.633	244.926	171.721	187.742	48.381	62.773

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249360.1	1598	7e-23	1511 - 1570	98	59 / 60	plus	ABC08523 ABC08526 ABC36498
MLOC	MLOC_1526.1	214	7e-23	116 - 175	98	59 / 60	minus	ABC36498
JLOC1	JLOC1_932.1	211	4e-23	113 - 172	98	59 / 60	minus
Harvest21	ABC08523	1561	3e-25	1502 - 1561	100	60 / 60	plus	ABC08523
Harvest21	ABC08525	637	1e-23	17 - 76	98	59 / 60	minus
Harvest35	U35_18015	1192	3e-25	1133 - 1192	100	60 / 60	plus
Harvest35	U35_18017	637	1e-23	562 - 621	98	59 / 60	plus

Contig Sequence (1192 bp)

>U35_18015 1192 Hv_44K_v2
GCTACTACCGGTGCGGGAAGGTCGGCGACGCCGACGCCGACATGTCCCTCAGGACTCCTC
CGGCGAACCTGCCCATCGAGCTGGTTGTCATCGGCGACCTCGGGCAGACGGGCTGGACCA
AGTCGACGCTGTCGCACATCCGCGAAGCAGACTACGACATGCTGCTGCTCCCCGGCGACC
TATCGTACGCGGACAGGGTGCAGCCGCTGTGGGACTCGTTCGGTCGTTTGGTTCAGCCGC
TGGCGAGCGCCCGGCCGTGGATGGTGACGGAGGGTAACCATGAGAATGAGCATGAGGATG
GGTTCGTCGCCTACAACAGTCGGTGGCGCATGCCGCACGAGGAGAGCGGCTCCAAATCCA
ACCTCTATTACTCCTTCGACGCGGCCGGCGGCGCGGTACACGTCCTCATGCTGGGATCCT
ACGCCAGCTTCCAGGAGGGGTCGGAGCAACATGCATGGTTGAAGAGGGACCTCGCCGGCG
TGGACCGGCAGAGGACGCCGTGGCTGGTGGTGCTGCTGCACGCGCCGTGGTACAACACCA
ACGAGGCGCACCAGGACGAGGACGTGGGCGAGAGCATGCGCACCGCCATGGAGAGGCTCC
TCTATGAGGCCAACGTCGACGTCGTCTTCGCCGGACATGTCCATGCCTATGAGCGCTTTA
CGAGGATCTACGACAACAAGGCCGACGCCCGGGGTCCAGTGTACATCACCATCGGCGATG
GTGGCAACAGGGAAGGCCTTGCTTCCAAATTCATCAAGGATCACAAATCGGCGCCGCTTT
CCTTGTTCCGTGAGGCGAGCTTCGGACACGGGCGACTGAGGATCGTAAACGAGACGACCG
CCGTCTGGAGGTGGCACCGTAACGACGACAAGTTCGCCACCGTGGCCGACGAGGTCTGGC
TGGAGAGCTTGGCTACTCCAAACACACCAACCAAGCGCCGGTCGTTGCACAGATGAGTTG
CAGGGTGTGCCACCACACGATCCACGTTGGCTTAACTGCAACCTATCAGAATTGGATGGT
TCACTACTATCTTTACCTAATAACTAAAAAAAGAGCTCGTGCGTTCCAACGGAAGAGAAA
ATAACACACGCTCTGAACGTAATATATTTTTACATAACATCATAATTGTGTTGCCGACGA
TGGCTTTAGTGCTCACACAATGAAAACGCATTTGAATATACAGTCACTCGGA

Homology of Contig U35_18015 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05400.1	573	2e-169	protein\|Ser/Thr protein phosphatase family protein, putative, expressed
Brachypodium v1_2	Bradi4g42517.1	529	5e-175
Arabidopsis v10	AT3G52820.1	434	1e-138	\| Symbols: ATPAP22, PAP22 \| purple acid phosphatase 22 \| chr3:19574236-19576938 REVERSE LENGTH=434