barSeed - Barley Seed Development Database

Probe CUST_28633_PI390587928

Source Contig U35_32309

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28633_PI390587928	Hv_44K_v2	ATCCCGATTCCCGACACAGCAGTCAACACTGCTCCGTAGACAACAGCGGTACAAGGTTCG	18	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4563.1	3001	2e-24	2799 - 2858	100	60 / 60	minus	None
MLOC	MLOC_4563.2	3042	2e-24	2881 - 2940	100	60 / 60	minus	None
JLOC1	JLOC1_2858.1	2963	8e-25	129 - 188	100	60 / 60	plus
Harvest35	U35_32309	486	3e-25	19 - 78	100	60 / 60	plus

Contig Sequence (486 bp)

>U35_32309 486 Hv_44K_v2
ATCATCAGCAGACACCTGATCCCGATTCCCGACACAGCAGTCAACACTGCTCCGTAGACA
ACAGCGGTACAAGGTTCGCCGGCGGCGTTCGCGGATCGATGGCGGCGTTCACGGAGGAGG
AGAGGGCGGTGGACGACGCGCTGGGCTACCCCAAGGCCTACGCCAGGCTCTGCCGCGCCG
GCTCCGGCGCGGGCGCACTCGGCCTCCCCTACGCCCACGGCCCGCCCGGCGCCTTCCTCC
CCTACGTCCTCCAGCCCCACGAGGTACCTTCTACCTGCCTTTTCTCCCGCGGATCCGCCC
GCCCTTCGCTCCCTCCCCCGCCTCCGTGCCGCTTCGTGATCCGATCTGATCCGTGCAGGC
GCTGCGGGCCAAGGAGCTCAACGAGATGTTCCCGGTGGTGGACGCGGAGGCGACGCCCAC
CGCCAACCCGCGCGGCTTCGCCAACCTGCTCTGGAAGCAGCTCGACCACCTCGGCAACGC
CGGCTT

Homology of Contig U35_32309 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None