barSeed - Barley Seed Development Database

Probe CUST_28632_PI390587928

Source Contig U35_18016

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28632_PI390587928	Hv_44K_v2	AACCATGAGAATGAGCATGAGGATGGGTTCGTCGCCTACAACAATCGGTGGCGCATGCCG	637	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249360.1	1598	2e-24	656 - 715	100	60 / 60	plus	ABC08523 ABC08526 ABC36498
MLOC	MLOC_42886.1	273	2e-24	21 - 80	100	60 / 60	minus	ABC08523
JLOC1	JLOC1_27722.1	271	8e-25	20 - 79	100	60 / 60	minus
Harvest21	ABC08524	828	3e-25	638 - 697	100	60 / 60	plus
Harvest21	ABC08523	1561	1e-23	645 - 704	98	59 / 60	plus	ABC08523
Harvest35	U35_18016	828	3e-25	638 - 697	100	60 / 60	plus
Harvest35	U35_18015	1192	1e-23	276 - 335	98	59 / 60	plus

Contig Sequence (828 bp)

>U35_18016 828 Hv_44K_v2
CCCACCCCATCTCTTGTGGCATTCTGGCCATTGACATCGTCAAACGTCGGTGATGTTCAG
GCGCACCCAGGCCGATGAGTATGTCCGGCCGCCGCCGAGACCGCTGGTGTTGACGGCGCA
AAACAAGCCGCCAAACTATCCACAACAGGTGCACATTTCAAGCGTGGGAAGCAAGCACAT
GAGGATCTCGTGGGTCACCGACGACCGGCGTACTGCGTCTGCGCCGTCGGTGGTGGAGTA
CGGCACATCTCCTGGGAACTACACGGCGTCCGCCGAGGGAAGCCATACGACGTACCGCTG
CTCCTCCTACTACTCCTCCGGCGCGATACATGAGGTGACGATCGGCCCGCTCAAGCCCAG
CACCACCTACTACTACCGGTGCGGGAAGGTCGGCGACGCCGACATGTCCCTCAGGACTCC
TCCGGCGAACCTGCCCATCGAGTTGGTTGTCATCGGTGACCTCGGGCAGACGGGCTGGAC
CAAGTCGACGCTGTCGCACATCCGCGACGCAGACTACGACATGCTGCTGCTCCCCGGCGA
CCTATCGTACGCGGACAGGGTGCAGCCGCTGTGGGACTCGTTCGGTCGTCTGGTTCAGCC
GCTGGCCAGCGCCCGGCCGTGGATGGTGACGGAGGGTAACCATGAGAATGAGCATGAGGA
TGGGTTCGTCGCCTACAACAATCGGTGGCGCATGCCGCACGAGGAGAGCGGCTCCAACTC
CAACCTCTACTACTCCTTCGACGCGGCGGGCGGCGCGGTACACGTCCTCATGCTGGGCTC
CTACGCCAGTTTCGAGCAGGGGTCGGAGCAACATGCATGGTTGAAGAG

Homology of Contig U35_18016 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05400.1	573	5e-126	protein\|Ser/Thr protein phosphatase family protein, putative, expressed
Brachypodium v1_2	Bradi4g42517.1	529	2e-128
Arabidopsis v10	AT3G20500.1	437	4e-99	\| Symbols: ATPAP18, PAP18 \| purple acid phosphatase 18 \| chr3:7157926-7160244 FORWARD LENGTH=437