barSeed - Barley Seed Development Database

Probe CUST_28631_PI390587928

Source Contig U35_18017

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28631_PI390587928	Hv_44K_v2	GCTTTAGTGCTCACACAATGAAAACACATTTGAATATACAGTCACTCGGAATAAGATAAG	571	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249360.1	1598	2e-24	1521 - 1580	100	60 / 60	plus	ABC08523 ABC08526 ABC36498
MLOC	MLOC_1526.1	214	2e-24	106 - 165	100	60 / 60	minus	ABC36498
JLOC1	JLOC1_932.1	211	8e-25	103 - 162	100	60 / 60	minus
Harvest21	ABC08525	637	3e-25	7 - 66	100	60 / 60	minus
Harvest35	U35_18017	637	3e-25	572 - 631	100	60 / 60	plus

Contig Sequence (637 bp)

>U35_18017 637 Hv_44K_v2
GAGAGCATGCGCACCGCCATGGAGAGGCTCCTCTATGAGGCCAACGTCGACGTCGTCTTC
GCCGGACATGTCCATGCCTATGAGCGCTTTACGAGGATCTACGACAACAAGGCCGACGCC
CGGGGTCCAGTGTACATCACCATCGGCGATGGTGGCAACAGGGAAGGCCTTGCTTCCAAA
TTCATCAAGGATCACAAGTCGGCGCCGCTTTCCTTGTTCCGTGAGGCGAGCTTCGGACAC
GGGCGACTGAGGATTGTAAACGAGACAACCGCCGTCTGGAGGTGGCACCGTAACGACGAC
AAGTTCGCCACCGTGGCCGACGAGGTCTGGCTGGAGAGCTTGGCTACTCCAAAGACACCA
ACCCAGCGCCGGTCGTTGCACAGATGAGTTGCAGGGTGCCACCACTCGATCCACGTTGGC
TTAACTGCAACCTATCAGAATTGGATGGTTCACTACTATCTTTACCTAATAACTAAAAAA
AGAGCCCGTGTGTTCCAACGGAAGAGAAAATAACACACGCTTTGAACGCAATATATTTTC
ACATGACATCACATTTGTGTTGCCGACGATGGCTTTAGTGCTCACACAATGAAAACACAT
TTGAATATACAGTCACTCGGAATAAGATAAGAAATAC

Homology of Contig U35_18017 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05400.1	573	8e-61	protein\|Ser/Thr protein phosphatase family protein, putative, expressed
Brachypodium v1_2	Bradi4g42517.1	529	7e-67
Arabidopsis v10	None