barSeed - Barley Seed Development Database

Probe CUST_28628_PI390587928

Source Contig U35_5104

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28628_PI390587928	Hv_44K_v2	GTGCTTTGTGCTTGTCTTAATTATATGTATGGAACAATGTGTGTTTACTTCCGTTTCCTT	1179	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.056	0.184	0.849	1.677	1.283	1.469
Raw	367.680	1831.029	7665.980	23215.283	6316.960	7910.307

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54282.2	1348	2e-24	1265 - 1324	100	60 / 60	plus	ABC10715 ABC10716
MLOC	MLOC_54280.4	6254	2e-24	4031 - 4090	100	60 / 60	minus	ABC10715 ABC10716 ABC20008
MLOC	MLOC_54282.1	2367	2e-24	38 - 97	100	60 / 60	minus	ABC10715 ABC10716
MLOC	MLOC_54280.6	4519	2e-24	2111 - 2170	100	60 / 60	minus	ABC10715 ABC10716 ABC20008
JLOC1	JLOC1_34934.2	2380	8e-25	2162 - 2221	100	60 / 60	plus
JLOC1	JLOC1_34934.1	2400	8e-25	2182 - 2241	100	60 / 60	plus
Harvest21	ABC10715	797	3e-25	699 - 758	100	60 / 60	plus	ABC10715
Harvest35	U35_5104	1278	3e-25	1180 - 1239	100	60 / 60	plus

Contig Sequence (1278 bp)

>U35_5104 1278 Hv_44K_v2
GAGAGAGCGTGTGTGTTTGTGTGAGGGTGAGGGATCGAGCGAGCCATGGGCCCTGGAATG
CTTGAGATGGCGATATTCTACGCACAGGAGCGCAGCTTCTTCCATCGGCTGGTGCGCGAC
CTCGGGCAGGAGAGGGAGCACATGAGGTGGGTGATCGCGCTCTGGCTCTGGCTCGAGGCC
GATGGGCACGACAAGTTCATGCGCCGCGCGTCCGCGCTCCCGGGCCCCGTCGTGCTGCGC
TTCGTCGACGAGGCGCTGGCGTGCCTCGCCCGCCTCGCGGGCCGCGAGCTCGCCGGCGCC
GGCACGCTCCTCCCCTGCACCAACGCGCTCCTCAACAGGCCCATCGACGACGTCACCTAC
TTCGAGGAGCACCGCGACAAGATCATGCCCGGCGTCAAGTTACTGTACAAGACCGTCTGC
CGCGTCGTCCTCGACGACACCTGCGCCTCCGACGACGCCATCTTCTTACCCAGGAGCAGC
ACCGCCTCCGTGCCGCGCGCCATCGGCTCTCCCGCGTTCGCCGGCCCCACCCCGGTCCCC
GAGACGCCGACGACGCCGACGACGCCGAGGTTCGCCGACCTGAACGCGATAATGACGCCG
AGGTTCTCCCAGCTGAACGCGATGGCGCCGCCGTGGTCACCGGTCCGGGTGGCGCAGCAG
CATCACCAGCAACACCAAATGATCATCGACCCCCTTCCAGAGGAGTTCCGCTCGCTCTTC
ATCACCTTCTCCCGCGGCTACCCTATCGACAAGGACGACATCAAGGAGTTCTTCAACTCG
CTGCACGGGCCGTGCGTGGAGGACGTGATGGTGGAGAGGGCGCCGGCGGGGCAGCTTCCG
GTGTACGGGAGGGTGGTGCTGCAGAGCCCGGACATGATCCCGGTGCTGCTCGGGGGCGAG
CCGACGGCCAAGTACATCATCAAGGGCAGGCACCTCTGGGCCAGGGTCTACGTGCCCAGC
TCCAGGCACTCCACCTTCATCGAAGCCTGAATGCTTGATCCATCCTACAATTAAGAAACT
GTGTGCATGAAGTTGGAGCTTGAAGATGCATGTGTCATGGCGATGGCACAGTCGGTTACT
CGGTTAATTGGCTACCTACTACTACTCGATTGATTGGTCCACAGACTATACTCGAGAGAT
GAGACCATCGATCGATATATACATATGTGTGTCCAGTTTGTGCTTTGTGCTTGTCTTAAT
TATATGTATGGAACAATGTGTGTTTACTTCCGTTTCCTTTTCATATAGACGTATGTTCTT
TCAAAAAAAAAAAAAAAA

Homology of Contig U35_5104 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None