barSeed - Barley Seed Development Database

Probe CUST_28627_PI390587928

Source Contig U35_5105

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28627_PI390587928	Hv_44K_v2	GCAAGCAACCTGAACATCTGAAAGGAAAGCAGATGTATCCGCATGGTATGAGCAAGTTTC	1410	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73046.1	429	2e-24	52 - 111	100	60 / 60	minus	ABC18520
JLOC1	JLOC1_48613.1	977	8e-25	600 - 659	100	60 / 60	minus
Harvest35	U35_5105	1473	3e-25	1411 - 1470	100	60 / 60	plus

Contig Sequence (1473 bp)

>U35_5105 1473 Hv_44K_v2
CTGCACTCGGGCGTTGCGGCGACGGAGTCTAGAAGGGCTAGTTCGTGTTCTAGCGATGGC
AAGTGTGACCCTGTACATGCAGATGTAGGCCACGAAGGTGGCGAGAACCATGGATCGTCG
GAGAAGAGGCTCAGCTCTGCCAGCCGAGCCAAGGACCGTCTCAAGATGATGCTGCGGTGG
CCTCGCCAGAGGGAGAAGATGTCCAGGACGCCGAGGAAATCCGAGGACAGCGGCCCACTG
GATACCATCAAGAAGCTGAACAATCATGTCGCTGACACCCCGACTCCGCTCAGGCAGGCC
TTCACCAAGACGATGGCGCTCAACAACAAGCGTACGCTCGCGATCAGAAGCTCCGCCCCC
AGCTCGGCCAGCAAGAAGAAGCTCATCCACGGCATCATGGAGGCCATGCCGCACCTCGCG
GCATCATCGACATCGACCCGGTCCCCTCCGAGCACCCTTCCAAGGTCCTCCTTGTCTTCG
GCGCCTATGTCCACCAAGCTCAAGGACATTTGCTTCGATGAAGACGAGGGCACGATGGTG
ACACCGCCGTTTGGCAAGCTCAAGGACATCATCCTGGACAACGATGACGGCGCGGACGAT
CCGTCGTGCTCGAACTCGTCCTTCGCCGACGAGGGGGTCGGCGTGGCCGCCCGGAGGAAC
CACGGCTGCGGGAACGGGAGGCTCATCAACATCTGCTTCGGTGCGCAGGGGCTCACGGTG
GAAGACTCTGCCAGCGGGCAGCAGACGAGCAAGATGTTCAAGCAGCAGTGTCTCCGGGTG
TCCTGACCTGGCCTGCGTTCGGTTTTGCGGTTCAAGGATATGTGTATGTGTATGTTGAAC
TCCCCCGGTTTGGTTTGGTTTGGTTTGGCGTGCTGCTCCGCGTACAAGAGCGAGGTGTGG
TTGATTTGCTAAAAGGTAGATTCCGTGTGTGTATCATGGTCAGGCGTGCTTGATTTTTGC
CAAGGGCTTGAGCTTGCTATCATCAAGTTATCGACGTGATTCCTCTATACATACACACGA
AATGTTTGAGCTATATCAAGCAAATTTAGGCTCAAACAACACGGGCTTGCTACAGTGGAA
ATGCATTTTGGAGCCTGTTTAAAAAGCACGAAAACTATTTGATTGAAGTTTTATCAAAAA
ACTGAAATAGTTTATATGCAGCGGCCGCTCTACAGGCTACCTAGATATGAACTCGGTGCA
GAAACGATGAACAGACGTGAATGTGGAATGTTGGGCTTTGAGCCTTACTATGAGGGACAT
TTTGAGACAATCTATCTATACACAAGGCTCTGTAACTTGCATTTTTTTGCACAGTCATGA
CAATGATGTGTTGTGCAGGGCAGGTTCCACATCGAACGGGGCATCTCAGCTTGAAGCTGC
GGCAGAGATCCGGTGCCAGGATGGGGTCGTGCAAGCAACCTGAACATCTGAAAGGAAAGC
AGATGTATCCGCATGGTATGAGCAAGTTTCTTT

Homology of Contig U35_5105 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g38970.2	718	5e-72	protein\|expressed protein
Brachypodium v1_2	Bradi3g47950.1	710	3e-84
Arabidopsis v10	None