barSeed - Barley Seed Development Database

Probe CUST_28626_PI390587928

Source Contig U35_5106

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28626_PI390587928	Hv_44K_v2	GGTTTTAGTTCTCGGTTGTTCAGAGTATGATGCAAAGATGCTCTTTTCTGGTTCCCCAAA	1145	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.285	2.559	1.352	0.513	0.091	0.074
Raw	1001.507	1186.150	552.534	328.892	21.482	19.087

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77252.3	1646	3e-22	1363 - 1418	100	56 / 56	plus	ABC13921
MLOC	MLOC_77252.4	1481	3e-22	1198 - 1253	100	56 / 56	plus	ABC13921
MLOC	MLOC_77252.2	1358	3e-22	1075 - 1130	100	56 / 56	plus	ABC13921
MLOC	MLOC_77252.5	1505	3e-22	1436 - 1491	100	56 / 56	plus	ABC13921
MLOC	MLOC_77252.1	1232	3e-22	1163 - 1218	100	56 / 56	plus	ABC13921
JLOC1	JLOC1_51517.2	1273	1e-22	1132 - 1187	100	56 / 56	plus
JLOC1	JLOC1_51517.1	1208	1e-22	1067 - 1122	100	56 / 56	plus
Harvest35	U35_5106	1219	3e-25	1146 - 1205	100	60 / 60	plus

Contig Sequence (1219 bp)

>U35_5106 1219 Hv_44K_v2
GCTCCTCGTCCTTCTCCATCTCTCTCTCCCTCTCGTCGCCTCGGCCCAGGGACGGGGGAC
GCGAACCGGCGAACGGCCTCCCCTCCTCTCTCACCGGCCGCCCGCCATTGCCGCTTCTTC
CCGAGTGCGGCTCTGATTGATTGGGGAAGGGTAGAAGATGGTTGTCCAGGAGTTCGCCGT
CGATCTCGACAAGCCTCTTGTTTTCCAGGTTGGCCATCTCGAGGAACAGTACCAGGAATG
GGTTCACCAACCCATCGTCAGCAAAGAAGGTCCACGCTTTTTCGCAAATGATACCATGGA
GTTCTTGACACGCACAAAGTGGTGGGCTGTGCCAGTCATATGGCTACCCGTCGTCTGCTG
GCTGTTTGCCAAGTCTATTCTGATGGGTCACACCATTCAGGAATTAATCCTTATGGCCCT
GTTTGGAGTGTTTGTCTGGACGTTGATTGAGTACAGTTTGCACCGCTTCCTCTTCCACAT
CGAGACGAAGAGCTATTGGTCGAACACAGCACATTACTTAATCCATGGATGCCACCATAA
GCATCCTATGGACTCGCTCAGGCTCGTATTCCCTCCTGCTGGGGCAGCGATCTTATGTGT
GCCGTTCTGGAATGTTGTGGCATTCTTTGCCAGTCCATCTACCACCCCTGCGCTATTCGC
CGGTGGCCTGCTGGGGTATGTGATGTATGATTGCACGCACTACTACTTGCACCATGGACA
GCCATCCATAGATCCAGCAAAGCATCTCAAGCGGTATCACCTCAGCCACCATTTCAGAAT
CCAGGACAAGGGCTTCGGCATCACCTCTTCGCTCTGGGACGCCGTTTTTGGGACGTTACC
TTCGTCCAAGATCGCTGCGAAGCTCAGTTGACACGCGTAAACGTGTTCTTTGCATGAGAA
AGTTTTAGAGAGGATTTGTAGGTCAAGGTTAGGTGCGAAGCTCCTCTCGCCATTCTGCTG
TGGGTTGGAGTTCCTGTGGCGTGTGCCGATGCCTGTTCCGGTGTGAAGATGTTCGATTGG
CCTTAAAATTCCATCCCCAGCCAATGGGCTATTATTCTTGGTAGTCGATGCTATAGGATT
CATCTTCGTGTTAGCTAGGATAAATAGCTACATTCTGCAACAACGCTTGTCATTTTTCTC
TCTTTGGTTTTAGTTCTCGGTTGTTCAGAGTATGATGCAAAGATGCTCTTTTCTGGTTCC
CCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5106 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g56820.1	251	4e-154	protein\|fatty acid hydroxylase, putative, expressed
Brachypodium v1_2	Bradi1g06790.1	238	1e-166
Arabidopsis v10	AT2G34770.1	237	1e-127	\| Symbols: FAH1, ATFAH1 \| fatty acid hydroxylase 1 \| chr2:14666776-14668061 FORWARD LENGTH=237