barSeed - Barley Seed Development Database

Probe CUST_28620_PI390587928

Source Contig U35_5112

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28620_PI390587928	Hv_44K_v2	GTTTCACAGCTTATGTTAGCTGATTCTTTGTAACCTACTCCGTACTTATTATCTGAGTAA	1651	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.694	1.510	1.180	0.918	0.351	0.410
Raw	590.310	832.507	563.924	685.291	92.550	117.282

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC11546	1725	3e-25	1652 - 1711	100	60 / 60	plus	ABC11546
Harvest35	U35_5112	1725	3e-25	1652 - 1711	100	60 / 60	plus

Contig Sequence (1725 bp)

>U35_5112 1725 Hv_44K_v2
CTTCTCCGCCTCCAAAACCCTATACGCTCCACCATGCCCAGCCTCGCCGCCGCCGCTGCC
GCTCGCCGCGCCGGGGAGGCCCTCCGCCGCGGCGTCGTCGGCGGTAGGTATCTCTCTTCC
CTCCGCCCGTCACCCGCTACTCCTGCCGCCCACGACAGCGACGAGGTGCTGGTGGAAGGC
AAGGCCAGTGCCCGCGCCTCCGTGCTCAACCGCCCCGGCCATCTCAACGCCCTCACCACC
ACTATGGGAGCTAGGCTCAACAAGTTCTACGAATCATGGGAGGACAGCCCTGACATTGGT
TTCGTCATGATGAAGGGCAGCGGCCGAGCATTCTGTGCTGGTGGGGATGTTGTTGGATTG
CGCCAACTTATCAATGAAGGCAAGCTGGACGAGTCTAAAGATTTTTTCAGGACTTTGTAC
AGTTTCATCTATGTTCTAGGCACATACTTAAAACCACATGTTGCCATTCTTGACGGTGTT
ACTATGGGTGGTGGAGGAGGTGTTTCCATTCCTGGAACATTTCGCGTTGCCACTGATAGA
ACAGTGTTTGCCACTCCAGAAGTACATATTGGCTTTCATCCGGATGCTGCTGCCTCCTTT
TATTTGTCACACCTAACTGGTCATGTTGGGGAATACCTGGCCTTGACTGGTGAAAAACTC
AATGGGGTTGATATGCTTGCACTTGGCCTTGCCACACACTATTCAATGAGTGATCACCTG
GATCTGGTTGATGAACGACTTGCAAAATTGGTTACTGATGATCCATCAGTTATTGATAGT
TCCCTTGCACAATATGGAGACCTTGTTTATCCAGATAAGACAAGCATTGTACATAGGCTG
GCGGTCATAGATAAATGTTTCAGCCATGAGACAGTGGAAGAGATCGTCGATGCATTGGAA
AGTGAAGCAGCTCAGTTGAATGAAGAATGGTGTACGTTGGCACTGAAAAGATTGAAAGAG
GCCTCCCCACTTGCTTTGAAAGTATCACTACGATCGATACGTGAAGGTAGATATCAGACA
CTTGATGAATGCCTTGTGCGTGAATACCGCATGTCTGTCAATGGCATTTCAAAGCCATTG
TATCATGATTTTTGTGAGGGTGTGAGAGCGCGGCTGGTTGACAAGGATTTGACCCCAAAG
TGGGATCCTCCTGCACTCGAGTTTGTTTCTGAGGACATGGTAGATTCTTACTTTGCCCCG
CTAGGAGAATTCGAGCCTGAGCTGAAGCTGCCTACAGAACAGCGAGAGGCATTCATATAG
ATTGTCCGACCCACTGTTGCTGTCAGCACATAAAACGACTAGGGCGGGCAGAGGGCACCT
ATTCATGTATACAATAGCCAAATCCTTGGCACGGTAGGGAATTTGAGCAGCAAGAGGAAT
TCACCCTTTTGTTTCCTTTTCATCCAGTGTTATAAATGCGCATCATTTTACCATGTAGCT
CGAGTTAAGGTACCACTGAGGACCGATCTAAGTTATCCCATCCGTTGACAGAAATTGAGT
GGCTGATATTAGGAATCTGGGAGATTTTGCTCAGGAAAGCTAGCCCTAATCACTCACAGT
GTTGTCGATACATGTGTTAGCTTATTATATATATGCTAGAACCGTTTTTGTTTGTGTCCG
ACCAAGTTGGTTGCACTGGTAATGGGACTTTGTTTCACAGCTTATGTTAGCTGATTCTTT
GTAACCTACTCCGTACTTATTATCTGAGTAATAAAAATCTTATTC

Homology of Contig U35_5112 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g40540.1	379	0.0	protein\|enoyl-CoA hydratase/isomerase family protein, putative, expressed
Brachypodium v1_2	Bradi3g32960.1	414	0.0
Arabidopsis v10	AT4G31810.1	409	1e-166	ATP-dependent caseinolytic (Clp) protease/crotonase family protein \| chr4:15387365-15390290 REVERSE LENGTH=409