barSeed - Barley Seed Development Database

Probe CUST_28613_PI390587928

Source Contig U35_5119

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28613_PI390587928	Hv_44K_v2	GGAGCCAGCAAAGACCGTGAATCCTCAGATCAATATATAGAACTTGTTTATTTCTAAAAA	760	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.643	6.091	1.136	0.936	0.501	0.505
Raw	207.204	243.823	37.980	57.529	9.181	9.623

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80253.1	928	3e-22	762 - 817	100	56 / 56	plus	ABC13689
JLOC1	JLOC1_53436.1	968	6e-21	794 - 849	98	55 / 56	plus
Harvest21	ABC13689	801	1e-23	730 - 789	98	59 / 60	plus	ABC13689
Harvest35	U35_5119	832	3e-25	761 - 820	100	60 / 60	plus

Contig Sequence (832 bp)

>U35_5119 832 Hv_44K_v2
GAGTGAGCTGCCGTGACCGAGAGGAGGCAAGGAGCCACAGCAGCCATGGCTCCCGCCACT
TCCACCTCCCCGCTCTCCCGCCTCCTGCTCAGCCTCCCCAAGCCCAACCCCCAGCCGCCC
CTCTGCGCCCAGGCCCAGAGCGCGGACTCCGGCGCTGGCGCCAGCAGCAAGAGCCTCGTC
CTCCGCCGGCGCGAAGCCGCGGCTGCCGTCCTGTCCGCCGCTCTCATCTCACGCGTCGTC
CCCGCAGCGGCCGCCTCAGACGAGTGCGCGCTCGAGGCTACCCCCTCCGGCCTCGCCTTC
TGCGACCGCGTCGTCGGCACCGGCGCCGAGGCCGTCAAGGGCCAGCTCATCAAGGCGCAC
TACCGGGGGATGCTGGAGGACGGCACGGTGTTCGACAGCAGCTACGGCCGCGGGAGGCCG
CTGACCATCATGGTGGGCGTGGGGGAGGTGATCAAGGGGTGGGACCTGTGCATCGCCGGC
GGCGAAGGGATCCCGCCGATGAGAGTCGGTGGGAAGCGGAGCCTGAGGCTGCCGCCGGAG
CTGGCCTACGGGGAGAAGGGGGCCGGGTGCAGGGGGTGGGAGCCCACGTCCTGCGTCATC
CCGCCCAACTCCACGCTCCTCTTCGACGTCGAGTACGTCGGCAGGGCATCCTCCTGATCG
ACCTATCCATCTATGTATCCTTGATCAGGACTTGCATATGTCATCAGTCGGTCGTAGAGG
TCTAGAGGATTCGTCCATCGATGGACATATATATATATGTGGAGCCAGCAAAGACCGTGA
ATCCTCAGATCAATATATAGAACTTGTTTATTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5119 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g45340.1	219	2e-70	protein\|peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed
Brachypodium v1_2	Bradi1g31780.1	219	3e-84
Arabidopsis v10	AT5G45680.1	208	6e-58	\| Symbols: ATFKBP13, FKBP13 \| FK506-binding protein 13 \| chr5:18530894-18532128 FORWARD LENGTH=208