barSeed - Barley Seed Development Database

Probe CUST_28603_PI390587928

Source Contig U35_5129

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28603_PI390587928	Hv_44K_v2	CTCTTTCTCTTGTCTTGTGGGGGTATTCTGTGAACTTTTAGCATGTCTTGCGTCAAAAAA	1086	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.602	1.460	0.978	1.001	0.461	0.478
Raw	1089.390	1548.075	910.812	1496.668	240.437	268.622

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356632	1312	9e-22	1219 - 1276	98	57 / 58	plus	ABC13140
JLOC1	JLOC1_43285.1	956	5e-22	862 - 919	98	57 / 58	plus
Harvest21	ABC13140	1144	3e-25	1074 - 1133	100	60 / 60	plus	ABC13140
Harvest35	U35_5129	1157	3e-25	1087 - 1146	100	60 / 60	plus

Contig Sequence (1157 bp)

>U35_5129 1157 Hv_44K_v2
GTGTTTTCGGCTCGGTCGCTCGCGTTGTAATCCAAATTCCCCTCGAGCGAGGCGAAGCCG
CCGCCGCAGCCGCCGCCTCCTCCTCCTCCTCCAGCCCCAGTTGCCTCTCTGACCTGATCC
ACCGCGCCGCCGCCAACCCTAGCTGCCGCCTTGACCTGTCCGCCCCGCATACCCCGCGAT
CTCCTCTGAACTCCTCTAGGTCTAGGGCATAAACTCCTCCGGCGCCGCCTGCCCCTGTTC
CGAATCAATGGGCCGGTCAAACGGCGACGGCCAACACATTGCCAGTTCTAATGATGGCAG
TGACGATGAAGTCGATATCGGAGATCCTTATCTTACCGATAGATTTGGAAATTTGACAAG
TTGGAGGTTGAGTGACTTGGAGGCAGCGGCGGGTGAAGAAATTAGTGAAAGAGAGGTAGA
AGAAAAGAAATATTCCAAAAAGGAAATGCTAAAGCGTGATGCTGACCGTAAGAAACAGTA
CATGGCATATGCTTTACAGAAATATAACAACGACGAGGATCTTGTTGGGGAGATGCGTTT
TGTGTTTGATGAAAGTAAAGATGAAGTTTTCATTATTGAAGGAAACATGAACTTCTATGA
ACACTTCAACTTTACAGCTAAGCAGGCTGGTTCCACTGTTCTATTTTTTGCTGAAGTGAT
CCCAGACGAAGGAGAACTGTGTGATGTTCTTTGCTGCAAGCCTTTGGATTCTGATGACAA
TGGACATTGCTTTGGTTGTAAGAATCAAGGTTCTGTGGACTTGAGGCATCCAGCTGGCGA
AAGTTTGTATGTTGGAGGTCATGTGGATTGCGAGTTCCCATTTATGTGGGATAGTATCAG
TGAGGATGACTCTGATTGAGAGGGAGGATGTCCTAGATGGCCATAAAGAATGTCTGATGG
GCTGTTGGTCTTCAATTATTCCCATTTTAACGTCCATGTGATGCTACTTGTATTTTGAAA
GGGCGTGTATAGTACCTTACACTAGCTATATAATTATACTTTCATAAAGCACAAACGTTC
TCCCAAGCGTGACTGGGCCGCACACCGTCCGATTTGTCTAAGGCAGCAGATGCAACCATT
CATAGACTCTTTCTCTTGTCTTGTGGGGGTATTCTGTGAACTTTTAGCATGTCTTGCGTC
AAAAAAAAAAAAAAAAA

Homology of Contig U35_5129 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g32270.1	293	5e-67
Arabidopsis v10	None