barSeed - Barley Seed Development Database

Probe CUST_28601_PI390587928

Source Contig U35_5131

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28601_PI390587928	Hv_44K_v2	TACTGGTAACAACAGCAGCGTATGTATGATGACCTGACTTGAGAGTTAACTTTAGCTTCC	1093	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12309.1	1048	6e-24	1 - 59	100	59 / 59	minus	ABC13423 ABC14455
JLOC1	JLOC1_8258.1	1370	3e-24	1192 - 1250	100	59 / 59	plus
Harvest21	ABC14455	662	1e-24	539 - 597	100	59 / 59	plus	ABC14455
Harvest35	U35_5131	1218	3e-25	1094 - 1153	100	60 / 60	plus

Contig Sequence (1218 bp)

>U35_5131 1218 Hv_44K_v2
GCTCACGAGTACGAACGCCGCCGCAGCGAAGGCAGGGTGGAAAAATAAACCAAAAAAAGG
GAAATAAATCCCGTGTTCTCCGATCGGAGGAGAGGGCGACGGGCGACGATGAGGGCGTCG
AAGCGGCCGCTCGGCGTGGTGACGGCGTGGGTGCGGCGCCAGCCGCCCAAGGTCAAGGCC
TTCCTCGCCGTGGTCACCGGCATGGCCGCGCTCGTCTTCATCCGCTTCATCGTCCACGAC
CACGACAACCTCTTCGTCGCCGCCGAGGCCGTGCACGCGCTCGGCATCGCCGTGCTCATC
TACAAGCTCACCAAGGAGAGGACCTGCGCCGGACTATCCCTTAAGACTCAGGATTTGACT
GCATTGTTTCTAGCTGTTAGACTATACTGCAGCTTTGTCATGGAATATGACATCCATACC
GTGTTGGATACTGCTACACTAGTGGCTACTCTTTTTGTTATTTACATGATTCGGTTCAAA
CTTAGGTCAACTTATATGGTGGACAAGGACAACTTTGCATTGTACTATGTGGTGATACCT
TGTGCTGTGTTGGCGATACTTGTTCATCCTTCAACATCTCACAACATCGCAAACCGGTTT
AGCTGGGCGTTCTGTGTTTACCTGGAAGCTGTCTCAGTGCTTCCACAACTGCGTTTGATG
CAAAATACCAAGATTGTGGAACCGTTCACAGCTCACTATGTATTTGCGCTGGGGGTTGCG
AGGTTTCTTAGCTGCGCCCACTGGGTTCTCCAGGTTTTGGACACTCGTGGGCGTCTGTTG
ACTGCGCTGGGCTACGGGTTGTGGCCATCCATGGTTCTCCTATCAGAAATCGTGCAGACC
TTCATCCTCGCAGATTTCTGCTACTACTATGTGAAGAGCCTCGTCGGCGGGCAGCTGGTG
CTACGGCTACCCTCCGGGGTGGTGTAGGAGGAGGATCTGCAGCGGGAGAAACGTCTGGTT
GGTTCACCCGTCAGGCATCTGCCTGAGGCCGGAGCCGTCTTGAACCAGATATTTTCAGTT
ACAGCTTACAAGTGTCATTATTAGTGAGAAAATCGCAGCAGCAGACATAGGTTTGTCGGT
GTGTGTGTGTGTGTACTGGTAACAACAGCAGCGTATGTATGATGACCTGACTTGAGAGTT
AACTTTAGCTTCCGGTAAAAAAAAAAAAAAACTCCATTTTAGAGAAAAAAAAAAAATTGC
GAAAAAAAAAAAAAAAAA

Homology of Contig U35_5131 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g43470.1	273	3e-167	protein\|ER lumen protein retaining receptor, putative, expressed
Brachypodium v1_2	Bradi4g36280.1	273	2e-175
Arabidopsis v10	AT1G75760.1	272	4e-157	ER lumen protein retaining receptor family protein \| chr1:28446940-28448421 REVERSE LENGTH=272