- Probe CUST_2859_PI390587928
- Source Contig U35_10832
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2859_PI390587928 | Hv_44K_v2 | CACTGATCTTTGAGATGTACTCCCATCATTCCTAAATATAAGTGTTTTTAGAGATTCGAC | 241 | GeneList: paleturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.311 | 3.505 | 1.294 | 0.751 | 0.425 | 0.438 |
| Raw | 1218.951 | 1268.145 | 407.523 | 391.840 | 75.575 | 86.358 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_18340.1 | 1450 | 2e-23 | 1393 - 1450 | 100 | 58 / 58 | plus | ABC04475 ABC21463 ABC37774 |
| Harvest21 | ABC21463 | 321 | 3e-25 | 21 - 80 | 100 | 60 / 60 | minus | ABC21463 |
| Harvest35 | U35_10832 | 321 | 3e-25 | 242 - 301 | 100 | 60 / 60 | plus |
Contig Sequence (321 bp)
>U35_10832 321 Hv_44K_v2 TGCGCGTCTGGGACAGCCTCTCCGGGGAGCTGGCTCGCATACTCAGCGGCCACCGTGACG CCGTGCAGTCGCTGGCCGTCTCCGCTGACTGCAACTCCATCGTCTCGGTCTCCTCGGATA AGTCTGCCCGCGTCTTTGACATATCCATGTTCAAGTAGAAATATCGAGATATTGGTTTCA TTGGCTTGCATGCATGGTCAGGAAATCTACTTGTGGCCATCATGGGGATCTCGTAACGTG GCACTGATCTTTGAGATGTACTCCCATCATTCCTAAATATAAGTGTTTTTAGAGATTCGA CTACAAAAAAAAAAAAAAAAA
Homology of Contig U35_10832 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |