barSeed - Barley Seed Development Database

Probe CUST_28591_PI390587928

Source Contig U35_5141

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28591_PI390587928	Hv_44K_v2	AATGGTGGATATGTCATGGGTCCATTTGGTGTACCTGAACCATACATGTACGGCTCAATG	1290	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.433	0.700	1.452	1.887	0.987	1.009
Raw	31.549	81.474	145.611	308.682	55.578	62.258

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71157.1	2814	2e-24	2208 - 2267	100	60 / 60	plus	ABC16338 ABC16498
MLOC	MLOC_71157.3	2895	2e-24	1875 - 1934	100	60 / 60	plus	ABC16338 ABC16498
JLOC1	JLOC1_47258.2	2286	8e-25	1234 - 1293	100	60 / 60	plus
JLOC1	JLOC1_47258.1	2850	8e-25	1798 - 1857	100	60 / 60	plus
Harvest21	ABC13101	1410	1e-23	1291 - 1350	98	59 / 60	plus
Harvest35	U35_5141	1410	3e-25	1291 - 1350	100	60 / 60	plus

Contig Sequence (1410 bp)

>U35_5141 1410 Hv_44K_v2
TTGAATGCAGAATATGCAGATGAAAATGCAATGATACCACAGAATGTAACTGTGCTGGTC
CGCCGAACTGCTGGGCAAGAGTCAGAGAATATCGTTGTAATATCCTCGCGGAAAGTTATA
GAAGATGGTTCTATAGCTTCAAACAGATCAGTGGTTACTGAATCAGTCTCAAAATCTTGT
TCCTCCGCAGAAATGAAAGATGAAGATGCTGCAATCGCAGCTGTGATTGATGCAGCTGAA
CTTAAATGGGAGGAGCAGTCATTTAAGAGAGGACAAGCTCCTGGAAGGTTTATATCAGGG
CGCCAGAATGGCCATGGATCATCAGAGAGGGAGGCACCTCCACCAGGCTACGTGTGCCGC
AGCTGTGGAGTTGCAGGCCATTTCATTCAACATTGCCCACAGGAAAACCAGACACCTCCA
CCTGGCTATACCTGCTACAGATGCCGGATTCCAGGGCATTTTATTCAGCATTGCCCAACT
ATTGGCGATTCTAAATTTGACAACTACAAAATGTCTCGTCCTGTTGCCCCTGTCGTACCG
CTGAATCCTGTTGATGGCATCCTATCTGCACTTGCCCCAGCTGCATCTGTGAGTGAAGTT
GATGACTTACCAGCAGAACTCCACTGCCAACTATGTAATAAGGTGATGGCAGATGCGGTT
TTAACAAGCAAGTGCTGCTTCGTCAGTTTCTGTGATAAATGTATTCGAGATTACATTATT
ACACAATCGAAGTGCATTTGTGGAGTGAAGGTACTTGCAGATTCCCTCATCCCAAATCCC
ACAGTTAGAAGCACAATCAGCAATTTGTTAGGAACAAGGACTTGCAGCACTGCCAGCGGT
ACAGGGAAGCACAGAAGTTCTTCAGGAAGCAACGCTGATCCCAAATCACAGAGCCACACC
ACCTCGGCTGCTTTGGAAAGGGACACGAAGCAATGTTTGGACAGCCAGCTATCGCCAGCT
GCTTCTGACGCCCGCCTCCAGGTCGCCACAGAACATGATCAAGTCGACCGGCCTCAGAAG
AATTCTGATCTGAAGAGCAACACTGAAGGCTCTGCAGGGCGTTCAGCAGAGAAAGCTGTA
CCTAGCGCTGACCTCCCCAAGCCAAAGGATGTAAGCGAATCAACATTAAAGGGCACTGCA
ATTTCATCAGGGACCTTGGAACCAAAAGTTGCTAGGTCTGATCAGTTGAAGAAGAAGCGG
AAGAAGGCAGACTCATCTAAGGCTGTTCACCCAAACAATGCTGACTATGGTTACAACGTT
CCATTTGATCCTTCATATTGTAACCCTTTCAATGGTGGATATGTCATGGGTCCATTTGGT
GTACCTGAACCATACATGTACGGCTCAATGGGCATGCCCTATGGTGGTTTCCCGATGGGT
CCATTTGGTATGAATCCCTTCGGCAATATT

Homology of Contig U35_5141 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g45730.1	698	0.0	protein\|DNA-binding protein-like, putative, expressed
Brachypodium v1_2	Bradi1g13180.1	628	0.0
Arabidopsis v10	None