barSeed - Barley Seed Development Database

Probe CUST_28590_PI390587928

Source Contig U35_5142

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28590_PI390587928	Hv_44K_v2	ATTAGCAGAGCAATACTTGGTTACAGTGCTCTGCATGCTGCTACAGTTTCTATCCACCCT	1383	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364912	2064	2e-24	1357 - 1416	100	60 / 60	plus	ABC10302 ABC10303
MLOC	MLOC_735.1	1855	2e-24	1765 - 1824	100	60 / 60	plus	None
MLOC	MLOC_735.4	1210	2e-24	914 - 973	100	60 / 60	plus	None
MLOC	MLOC_735.3	1827	2e-24	1124 - 1183	100	60 / 60	plus	ABC26057
JLOC1	JLOC1_444.1	1548	8e-25	979 - 1038	100	60 / 60	plus
Harvest21	ABC11435	1428	3e-25	1368 - 1427	100	60 / 60	plus
Harvest35	U35_5142	1444	3e-25	1384 - 1443	100	60 / 60	plus

Contig Sequence (1444 bp)

>U35_5142 1444 Hv_44K_v2
CAGCTCCTCCACACTCTCTCTCTTCCCCGTGCACCGCACCCTATCCTTCCTCTCCTCTCC
CACCGCTCCTCTCACTCCGCCGGGGCTCTCACGCCCCCGACCACCGCACCGCCAAGCTCA
GCGGCGCTCCACCACACTGCGCGCCCCGCCATGGCGGCCGCCGCCGCGGCGCTCGCGAGC
TCGCCCCTCGTCCACCTCACCGCCGCGGCCCGCGTCCGCTTCCCCAGGCCCAGGCCCGTG
GCCTCCTCGCGGTGGGGGTGCCCGCGGGGCGCCTACCTGGACTGGAGGCCCCTGAGGCGG
TGCGACCGGATGCGGCGCTTCTCCGTCGACGAGGGCGGCGGAGGCGGAGAGGACGGGGAG
AAGCGGGGCGAGGAGGAGGCCGCAGCGTCGGTGGAAGCCAAGGTGGGGGCCGCGGAGGAG
CTGGGCTCGGAGCGGAGCCGGTCGGGGAGCTTCTCCTCCTCATCGTCGCCGTCCTCTGCG
ACTCCTGGTGTATCAAGCGAGCCTCCTCTTTTGAGCTTCAGTGTGGATAATATTGATACA
GTTAAGTTATTGGAACTCCTAGGCCCAGAAAAGGTTGATCCAGTTGATGTCAAGGCTATT
AAGGAAAAGTTTTTTGGCTACACAACATTCTGGTTGACAAGAGAAGAACCCTTTGGTGAT
CTTGGGGAAGGAGTCCTTTTTGTTGGGAATCTCCGAGGGGACAGAGAGGAAATCTTTGGA
AAACTTCAGCAGCAGCTACGTGAACTTACAGGCGACAAATACAATCTTTTCATGGTGGAG
GAGCCCAATTCAGAAGAGGATGACCCACGTGGAGGACCACGTGTTAGTTTTGGTTTGCTT
AGAAGAGAAGTTTCCGAGCCTGGGCCTACTACCCTGTGGCAATACGTTATTTCACTGTTA
CTTTTCCTTCTCACCGTGTTCTCCTGTATTGAGCTAGGAATTGCATCAAAGATAAGCAGT
CTTCCACCAGACATTGTTTCATATTTCACTGATCCAAATGCGACTGGACCCCCACCTGAC
ATGCAACTTTTACTTCCATTCGTGGAATCAGCTCTGCCAGTGGCTTATGGCGTCTTGGCT
ATCCAACTATTTCATGAAATTGGACATATTTTGGCAGCATACCCAAAGAAGGTGAAACTT
GGCATTCCTTTCTTCATTCCGAACTTCACTCTTGGAACTTTTGGTTCAATTACCCAGTTC
AAATCCATTCTGCCAGATCGAAAGACAATGTTTGACGTATCAATGGCTGGTCCTTTGGCT
GGAGCTGCACTTTCTTTTTCAATGTTCTCTGTAGGCTTGTGGCTCTCCTCAAATCCTGCT
GGGGCAACTGATTTAGTTCAAGTACCCAGCAATCTGTTCCAGGGTTCTTTGTTACTTGGA
CTTATTAGCAGAGCAATACTTGGTTACAGTGCTCTGCATGCTGCTACAGTTTCTATCCAC
CCTC

Homology of Contig U35_5142 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g57840.2	463	0.0	protein\|peptidase M50, mammalian sterol-regulatory element binding protein, putative, expressed
Brachypodium v1_2	Bradi1g06080.1	556	0.0
Arabidopsis v10	AT5G35220.1	548	1e-161	\| Symbols: EGY1 \| Peptidase M50 family protein \| chr5:13484606-13487546 REVERSE LENGTH=548