barSeed - Barley Seed Development Database

Probe CUST_28588_PI390587928

Source Contig U35_5144

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28588_PI390587928	Hv_44K_v2	ATTCTGTCTGATGCGTGATTCGTAGTGATGCATGCCATCTCGCATGATCTGCCCAAAAAA	1234	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.179	1.662	1.622	0.937	0.254	0.327
Raw	5016.560	11148.367	9312.503	8877.010	792.697	1123.386

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_5144	1305	3e-25	1235 - 1294	100	60 / 60	plus

Contig Sequence (1305 bp)

>U35_5144 1305 Hv_44K_v2
CGCAAGCCCTCCTCCAAACCTCCCCGTCCCCATCTCGGCATCTCCACCTCCATCCGTCAG
CAAGCAAGCGATCCCGTCCAATCCATGGCCCTCCGCGCGCTGGACAACACGCTGCCGGCC
GCCGTGGCGGACCAGCGGCCCAAGAAGGCCGCCAAGCTGCTCCCCACGCCGCCCGCCCGC
TCCCCCACCGGCAGCGGCGTCAACGGCAACGGCAACGGGAAGAAGCAGCAGCAGCAGCGC
AACGACGAGAACTCGGCGCCGACGCCCAAGCCCGCGTCGCCGGTGGCTGCGGAGCCGGCC
GTGGAGTACGTCCGGTCCGAGGACCTGCCGCCCGTGCCTAGCCCCAAGGCCCGCGCCGCC
GGCCTCGTCGCGGGGCTCGACTCCAAGGACTGGGTCAAGGTCTGCGAGTCCCTCAACGAC
GCCCGCCGCCTCGCCGTCCACCACCCCGCCCTCCTCGCCCCCATCCTGGAGAAGGTGGTG
CTGGGGATCGTGAAGACGATGAAGAACCCGCGCAGCGCGGTGCTCAAGACCTCCGTGATG
GCCTGCGCGGACGTCTTCGCCGGCTTCGGCAACCTCATCTCCTCGGCCTCCGCCGACGCG
TTCGACAAGCTGCTGCTGCAGCTGCTGCTCAAGGCGTCGCAGGACAAGCGGTTCGTGTGC
GAGGAGGCCGAGAAGNCGATGCGCGCCATGGCCACCTCCATGCCGCCGCTGCCGCTGTTG
AAGAAGCTCAGGGCCTACGTCCACCACGCCAACCTCAGGGTCCGCGCCAAGGCCGCCGTC
GCCATGGCGCACTGCGCCGCCAGAATGGACGTGGAGACGATGAAGGAGTTCGGGCTGCCG
GCGCTGCTGCAGGTGGCCGCGGAGCTGCTCAACGACCGGCTGCCGGAGGCGCGCGAGGCC
GCCCGCAGCATCGTCGGCTCCACGCACACCGCCTTTTTCAAGGAGGCCGTCGAGAAGGAG
CAGGAGCAGGAGAAGAAGGAGAATGAGCAGCTCCAGCAGGAGAAGGAGAATGAGCAGCTC
CAGGAGAATGAGGAAGAAGAGGAGAAGGAGAAGAAGGAGGAGCCGTCTGCGGTGGCTGCG
GCATGGGAGAGCCTGTGCGCGCTGAGCCTGTCGCCCATCTCGGCGCAGGCCGTGGCCAAG
ATCGTCTCGCAGTTGCAGCCGCAGCCGCAGCCGCAGGCACAGTAGCAACTCTGCTTGATT
GATTGATCATCACATCGGCGTCCCTTTCGGCGCGATTCTGTCTGATGCGTGATTCGTAGT
GATGCATGCCATCTCGCATGATCTGCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5144 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g70560.1	318	5e-113	protein\|expressed protein
Brachypodium v1_2	Bradi2g59700.1	331	1e-124
Arabidopsis v10	AT4G15830.1	296	2e-61	ARM repeat superfamily protein \| chr4:8995285-8996548 REVERSE LENGTH=296