barSeed - Barley Seed Development Database

Probe CUST_28587_PI390587928

Source Contig U35_5145

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28587_PI390587928	Hv_44K_v2	TTCCCTCAACCCGTTTTGGCTGGGATATCTTGATACATGTACCTTGTATTCAACAAAAAA	1000	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.952	1.591	1.516	1.293	0.697	0.773
Raw	336.390	865.394	733.634	990.354	184.213	223.468

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44139.1	3095	9e-22	2938 - 2992	100	55 / 55	plus	ABC16492
JLOC1	JLOC1_28576.2	2869	5e-22	2707 - 2761	100	55 / 55	plus
JLOC1	JLOC1_28576.1	3108	5e-22	2946 - 3000	100	55 / 55	plus
Harvest21	ABC16492	928	2e-22	851 - 905	100	55 / 55	plus	ABC16492
Harvest35	U35_5145	1071	3e-25	1001 - 1060	100	60 / 60	plus

Contig Sequence (1071 bp)

>U35_5145 1071 Hv_44K_v2
GGCACCTTAAGTTTGCTATTCAGTCTCAAGAGTTCTTCAGGACACTACAGCGATACTACA
GTAATGCCTATATGGATGCTTACAAACAGGCAGCAATAAATTTATTCTTGGGTTACCACC
GGCCGCAGCAGGACAAATTTGCACCTTGGGAGTCAGAGTCTGTCGCTGGGGAGAATGTCC
TTGATGACAAAACAAGTCAATTGATAAAAAGGGCAAGATCAGATGGCAGCATTCTTCGTA
AAAGTAACACTTCTATGTCCAGCAATGGCCCAAATGGAATTTCGACACCAGGATTTAGTG
ATTTCAAAATTGAGCTACAACCTCCTAACTGCCGGGCTGACTCAGTGCATGATGTGGTGT
CAAAATTAAGGTATACTCCAACAGTGCCTCATATTAAGTATGCCAGTTGCAAGATTGACT
ATGGCAGCTGTTCTGGGGATTCAAATTTCCTTGATCTTGACTGGCTTTCAGCTTCAGACA
ATGGAAGTTTGAGCAGAACAAGAGCTGTAAGTACTTCTAATGTGAACGATAATGGTGCAC
GCGGTGTAGCCCCTGGGATAACGGGGTTATCTGTGAATTTCCTGCAATGGGTTGATGAGG
GGGAGGCTTTTTGGTACTGATATCGCTAGATGATTTGTCATGTATATCGAAGCCACAAGA
TGGCTCTCCAACAGTTCATAAGACTATTGCGATTGGTGAGGGCACAATATGAGATAAGCC
ATTCGCATACTCAATGTGATTTATGGTCTCGCAAATGTCACAGCCATCCAGCTAGTCCTC
TAGTGAAGTGTAAAATTCTCTTCATTTCTTGTTGACCAGCAATTTCTTCTAGGGGTGAGT
AGATAGGCATTGTTCTTATTTTTCTTAAAGGAAAGAAAGAATGTAGGTAGTGTATTATTC
TTTGGAAAGTTGTACCATTGCTCGTGTTTCTATTGTGTAAATATATATATGTCCTGCTGA
CATTTCCCCCTGAGGTGAGGTGGTCTCGAAATCATCGTTTTTCCCTCAACCCGTTTTGGC
TGGGATATCTTGATACATGTACCTTGTATTCAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_5145 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g09540.1	804	2e-74	protein\|SAC domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g46660.1	787	1e-96
Arabidopsis v10	None