barSeed - Barley Seed Development Database

Probe CUST_28583_PI390587928

Source Contig U35_5149

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28583_PI390587928	Hv_44K_v2	CCTTGCACTTTACATTTTTAAACAACCCGAATTTACAAGAATCCATTGTTTTGAGGCGAA	1299	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366514	1534	7e-23	1439 - 1498	98	59 / 60	plus	ABC11515
MLOC	MLOC_57231.2	2239	7e-23	400 - 459	98	59 / 60	minus	ABC11515 ABC16379
MLOC	MLOC_57231.1	1943	7e-23	537 - 596	98	59 / 60	minus	ABC11515 ABC16379
JLOC1	JLOC1_37054.2	2532	4e-23	1659 - 1718	98	59 / 60	plus
Harvest21	ABC11515	1374	3e-25	1300 - 1359	100	60 / 60	plus	ABC11515
Harvest35	U35_5149	1374	3e-25	1300 - 1359	100	60 / 60	plus

Contig Sequence (1374 bp)

>U35_5149 1374 Hv_44K_v2
CACCTTCCTTCACCTCTTCTGCCTCCACCCGGGCCGGACACGTACCGGCTCGTCTCTTCT
TCCCTCCGCCGCGGGCGCCGCCACCTGCCACCGTTCCTGCGATGGCCGGCACAGTTCATA
TCCAGTGGTGCACATAGATTTTGCTTCTAGCCAGCCGTCTCGTAGTCGAGCCGGAGGGAG
AGGAGATGGACGCCGGCGTGTGTCTCCGGCCGAGGCCCCGTGCATGGGCCGGACGCCGAG
AGCAGCAGGAATTCCCCCCGGCGATATTGCCGGCGGCAAGGCTCGCAGTCGCAGCCGACC
AGAATCCGGCGCGGCGGCCGCTGGTCCTGCGTTCCGGCGCGGGGAGGAGGAGCGCCGATC
CGATCCGTGGCGCCGCCAGGCTGAAGGGCCTGTGCTGCCAGAAATCGGCAGATGCAGGTA
CTGAGAAAGTCCATTATTCTGCTGACGAGGCTCTTGTACTCAAGCAAAAAGCAGAGGACG
TGCTCCCTTACCTGAATGACCGATGTGTTTATCTAGTTGGAATGATGGGTTCTGGCAAAA
CTACAGTTGGGAAGATAATAGCTGAAGTACTAGGCTATTCCTTCTTTGACAGTGATAAGC
TGGTTGAGCAGTCTGTTGGCATACCGTCGGTTGCTGAGATTTTCCAGGTCCATAGTGAAG
CATTCTTCAGAGATAACGAGAGTGAGGTGCTCAGGGATTTGTCGTCAATGCACCGGTTAA
TTGTTGCAACAGGAGGTGGTGCGGTGATACGACCAATCAATTGGAGTTATATGAGGAAAG
GACTCACTATCTGGTTAGATGTTCCAGTGGACGCCCTTGCAAGAAGGATTGCTGCGGTCG
GTACAGCTTCACGGCCCCTCTTGCATCATGAATCTGGAGATCCTTATGCGAAGGCCTATG
CAAAACTTGCGACACTTTTTGAACAAAGAATGGACTCATATGCTAATGCTGATGCCCGAG
TTTCCCTTGAAAATATTGCATTCAGACAAGGCCATAATGATGTGAATGTACTTACACCAA
GTGCCATCGCTATTGAGGCATTGCTAAAGATGGAGAGCTTTCTTACTGAGAAGGCCATGG
TCAGAAACTGACCAGATATCGGTGGTTTCAAAGAACGATGACAACCACGGTTCTTGGTTG
TCGTGATGTATATACGTTTGCATAAGTCATCCTTGTTGATATAGCCAGAGCTGTGACAGA
GGAAAACTTGGGCTTTTACACAAGTAATTGTCATGATGTATATATCTTGTCGCGGTTTGA
TATATGTGATTTGGATAGCTATGTTGCCGTTTTGATATCCCTTGCACTTTACATTTTTAA
ACAACCCGAATTTACAAGAATCCATTGTTTTGAGGCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_5149 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g54800.1	288	5e-144	protein\|shikimate kinase, putative, expressed
Brachypodium v1_2	Bradi5g23460.1	298	1e-160
Arabidopsis v10	AT2G21940.4	304	3e-82	\| Symbols: SK1, ATSK1 \| shikimate kinase 1 \| chr2:9351106-9352881 FORWARD LENGTH=304