barSeed - Barley Seed Development Database

Probe CUST_28582_PI390587928

Source Contig U35_5150

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28582_PI390587928	Hv_44K_v2	GATGAAGTGATCTGCCGATTGATCATCATCGATTGGATCGCTTGGTTGTCTATCAAAAAA	335	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81885.1	756	3e-21	348 - 401	100	54 / 54	minus	ABC11710
JLOC1	JLOC1_54466.1	698	2e-21	286 - 339	100	54 / 54	minus
Harvest21	ABC11710	406	3e-25	336 - 395	100	60 / 60	plus	ABC11710
Harvest35	U35_5150	456	3e-25	336 - 395	100	60 / 60	plus

Contig Sequence (456 bp)

>U35_5150 456 Hv_44K_v2
GCACGAGGCGTCCGGATTCGCTATCACCGCCGCTACCACCTGGTAGTACCATTACCCATG
GACATTAGCTAGCTAGCTAGGGGTTTCACATCAAAATTTCATTTTTTCTTCTTCTTTTGA
TTGTTTATTTTGGTAGTAGTAGTAGGTTCGTTGGTTGTTGTTGTTGTGGACTGAACTTGG
GGCATGCATATGCATGCGCTGCTGGTTTTAGACCGAACTTGCTGCATGCATACGCATGCG
CTGCGTGTCTGTTCTGCTGTTCATAGTAGTGTCTCGTGTGTGTGTCTGTCTGTTCCGTTT
TGGTTCGGATTAGTGCATAGGTTTTAAGCAAGAACGATGAAGTGATCTGCCGATTGATCA
TCATCGATTGGATCGCTTGGTTGTCTATCAAAAAAAAAAAAAAAAAGAGTCTCACACGGA
GAGGGCAGGTTGCGTTTGGGAAAAAAAAAAAAAAAA

Homology of Contig U35_5150 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None