barSeed - Barley Seed Development Database

Probe CUST_28578_PI390587928

Source Contig U35_5154

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28578_PI390587928	Hv_44K_v2	AGCAACGAGCGAATAAACTTGAAGGCTCTATTCTTGATGTTGCCATATCAGTTTCATATG	1350	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.439	10.346	2.272	0.666	0.617	0.476
Raw	122.119	229.388	39.625	19.250	5.212	3.080

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5431.2	2476	2e-24	2280 - 2339	100	60 / 60	plus	ABC10893
JLOC1	JLOC1_3495.3	2512	8e-25	2292 - 2351	100	60 / 60	plus
Harvest21	ABC10893	1448	3e-25	1351 - 1410	100	60 / 60	plus	ABC10893
Harvest35	U35_5154	1448	3e-25	1351 - 1410	100	60 / 60	plus

Contig Sequence (1448 bp)

>U35_5154 1448 Hv_44K_v2
GATCGGCCCGTTCCGGATCAAGCCCAACGGGACGGGGCTCTTCCTCAACAAGTACTCGTG
GAACAGAGAGGCAAACCTTCTCTTCCTCGAGTCCCCCGCCGGCGTCGGCTTCTCCTACTC
CAACACCTCCTCCGATCTCAAGACCTCCGGCGACGAGAGGACCGCTCAAGACTCGCTGCA
GTTCCTGATCGGCTGGATGTCGCGGTTCCCGCAGTACCGGCACCGGGACTTCTACATCGC
CGGAGAAAGCTACGCCGGCCACTACGTGCCACAGTTGGCGAGGAAGATCGTCGAGTACAA
CAAGGCTTCGCCGAATCCCTTCATCAACCTAAAAGGAATCCTTGTGGGGAACGCGGTGAC
CGACAACTACTACGACAACATCGGCACGGTGACCTACTGGTGGACGCACGCCATGATCTC
CGACGGCACCTACAGAGCCATCCTCAAGCTCTGCAACTTCACCAGCGCCAATGTTTCGAA
TGCCTGCAACCGGGCCATGAGCTACGCCATGAACCACGAGTTCGGGGACATCGACCAGTA
CAGCATCTACACGCCCTCCTGCCACTCCACCTCCGACTCGTCGGCGGCATCCGGCAACTC
CACTGCACCCCGCAGGCACCGCCGTGCAGTGCTCAGGTTCAAGGACACCCTCATACGCCG
GAGGTCCAACAGCTACGACCCCTGCACTGAGACCTACGCCGAGAGGTACTACAACCGTCT
CGACGTGCAGAAGGCCATGCATGCCAACATAACTAGGATCCCCTACAGATGGACCGCCTG
CAGTGATGTGCTCATCAAGACATGGAATGACTCCGAGTTGTCGATGCTGCCGACGTACAG
GATGCTGATCAAGGCTGGGATCAGGATATGGGTGTTCAGCGGCGACACGGATTCGGTTGT
CCCAGTGACCGCAACGAGATTTTCGCTCAGCCACCTTAATCTGAAGACTAAGATCCGCTG
GTACCCATGGTATTCAGCTGGTCAGGTAGGAGGGTGGTCTGAGGTGTATGAAGGTCTGAC
ATTTGCGTCGGTGAGAGGCGCAGGGCATGAGGTGCCATTGTTCCAGCCAAGGAGGGCATT
CAGGATGTTCGTGTCATTCCTGGCTGGGAAGCCATTGCCCAAATCCTGAAGGTTCGTGCC
TGCCATGAACATGAACTGATGATGTGCAGCGTGATGCCTAGCTAAACGTCTGAAAACTGT
TGTAAGATGGATGGAGAGAGTGATGTAGAGTGCTTGCAAGTAGTAGAAAATAACTAGTAG
TTCATAGGCTACGAGTGATTGATTTGGTGCTGGTGAACAGGATGAGAAGAGAATAAGGGT
GATTATGCCATGGAAACCATGGGCATTTGCAGCAACGAGCGAATAAACTTGAAGGCTCTA
TTCTTGATGTTGCCATATCAGTTTCATATGAAGAATATTTATTTTATCTTCAAAAAAAAA
AAAAAAAA

Homology of Contig U35_5154 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g55130.4	387	protein\|OsSCP10 - Putative Serine Carboxypeptidase homologue, expressed
Brachypodium v1_2	Bradi3g54000.1	479
Arabidopsis v10	AT4G30610.1	465	\| Symbols: BRS1, SCPL24 \| alpha/beta-Hydrolases superfamily protein \| chr4:14944219-14948391 FORWARD LENGTH=465