barSeed - Barley Seed Development Database

Probe CUST_28574_PI390587928

Source Contig U35_5158

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28574_PI390587928	Hv_44K_v2	GCTTGGATGCTGACAAGGGTTCCAATCCAATAAGTATAGTCTGTCCAGGTTGCAACTAAA	1158	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	11.390	5.829	1.216	0.621	0.287	0.288
Raw	273.163	216.883	40.476	33.638	3.114	4.524

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_33582.2	1393	1e-23	1141 - 1198	100	58 / 58	plus
JLOC1	JLOC1_33582.1	1679	1e-23	1427 - 1484	100	58 / 58	plus
Harvest21	ABC13249	434	3e-25	365 - 424	100	60 / 60	plus	ABC13249
Harvest35	U35_5158	1228	3e-25	1159 - 1218	100	60 / 60	plus

Contig Sequence (1228 bp)

>U35_5158 1228 Hv_44K_v2
TCGAGCACTGTTGGCCTGGCTCGCCAGATCATCCTCCTACTCCTACTCCTACCTACATAC
CCCGTCTCCCTCCCCTCCCCTTTCTCCTCCCCCCGCGCCCTGCCCCGAGTAAAAAAGGAA
GGAAGGAAGGAAGGAAGAGCAGAGTCCACACGGCAGAGGCCAGAGGCGGGATGCCGATCC
TGTACGGGGTGGTGGCGCGGGGCGCGACGGTGCTGGCGGAGCACAGCGCGGCAGCGACCA
ACGCGGGCGCCGTCGCGCGCCAGGTCCTCGAGCGCCTCCCCGACGGCGGCGCCGACAGCC
ACGTCTCCTACACCCAGGACCGCTACGTCTTCCACGCCAAGCGCACCGACGGCATCACCG
CCCTCTGCATGGCCGACGACGCCGCCGGACGACGTATCCCATTTGCTTTCCTCGAGGATA
TCCATGGAAAGTTTGTTAAGACATATGGCCGCGCTGCACTGACAGCTCTTGCTTATGCAA
TGAATGACGAATTCTCAAGGGTTCTCAGTCAGCAAATGGACTACTATTCAAATGACCCTA
GTGCAGATCAAATCAACCGTATGAGAGGCGAAATCAGTCAGGTTAGAAGTGTTATGATTG
ATAATATCGATAAAGTACTTGAAAGAGGTGACCGTTTAGACCTATTGGTGGACAAGACTA
CAACTATGCAAGGAAATACAGTTCGTTTCAAAAGACAAGCTCGCCGCTACAGAAGCACAA
CTTGGTGGAGAAATGTCAAACTCACGGCCGCGTTGATACTCCTCCTCCTTGTAGTAGTAT
ACATCGCCCTCTTCTTCGTGTGCCACGGCTTCACGTTGCCGACTTGCATCCGGTGAGAGG
GCCCAGGGTCATATAAATTCGTCTCGTGGTGTGCCTGTGCCCATGGCTTGTCTGTCTCCC
AGCCCAGGAGAGCGACCGTTGCAGCGCCAGCGCAACCGGTCGCATTGCAAAAAGTATTTT
TTGTGTGTGTAGAAAGAGAAAGGAGACGGGCCTGCTATTTATTCTGTAATTGTGACGCCT
TGGATTGTGAAGACTCCGTTTGGAACGTAATCGAGTGCCTTGCTCATTCAACGCTGGAGT
GGGACCGTTGTGCTGTGCTTGTGTTGTGTGGCCACCGTTGTCCGTTGCTGTGGGTGGGTG
TGCTGCATGGTTTCAGCAGCTTGGATGCTGACAAGGGTTCCAATCCAATAAGTATAGTCT
GTCCAGGTTGCAACTAAAAAAAAAAAAA

Homology of Contig U35_5158 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g07780.1	222	4e-128	protein\|vesicle-associated membrane protein, putative, expressed
Brachypodium v1_2	Bradi1g47940.2	222	3e-133
Arabidopsis v10	AT4G32150.1	219	1e-99	\| Symbols: VAMP711, ATVAMP711 \| vesicle-associated membrane protein 711 \| chr4:15526407-15527651 REVERSE LENGTH=219