barSeed - Barley Seed Development Database

Probe CUST_28571_PI390587928

Source Contig U35_5161

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28571_PI390587928	Hv_44K_v2	TTTGTACAGTTTCTACGCTTGAACTGGACATCCGGTGCTTATTTGCATCGCTGAGCATCT	1463	GeneList: saddlebrown MasterList: Starch_synthesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.221	0.427	1.008	1.748	1.159	1.371
Raw	2142.100	6347.217	13555.337	34497.533	8568.897	10845.460

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360516	1967	2e-24	1879 - 1938	100	60 / 60	plus	ABC10765 ABC47376
MLOC	MLOC_57328.2	2150	9e-22	79 - 140	97	60 / 62	minus	ABC10765 ABC47376
Harvest21	ABC10765	1599	3e-25	1464 - 1523	100	60 / 60	plus	ABC10765
Harvest35	U35_5161	1599	3e-25	1464 - 1523	100	60 / 60	plus

Contig Sequence (1599 bp)

>U35_5161 1599 Hv_44K_v2
GGCACCAGGTCAGCAACTGCCTCAACAGCAATGTGTCCAAGATCTATGTGCTGACGCAGT
TCAACTCCGCGTCGCTCAACCGCCACCTCTCGAGGGCCTATGGGAACAACATTGGCGGGT
ACAAGAATGACGGTTTTGTTGAAGTTCTCGCCGCGCAGCAGAGCCCGGAGAATCCTAACT
GGTTTCAGGGTACCGCAGATGCCGTGCGGCAGTACTTATGGCTGTTTGAGGAACACAATG
TTATGGAGTTCCTTATTCTGGCTGGAGATCACCTATACCGTATGGACTACCAAAAATTCA
TTCAAGCACACAGAGAAACAGATGCTGATATTACTGTGGCTGCCCTGCCAATGGATGAGG
AGCGCGCAACTGCATTTGGCCTGATGAAAATTGACGATGAAGGGAGAATTGTTGAGTTCT
CAGAAAAACCAAAAGGAGAGAAGTTGAAGGCAATGATGGTTGACACCACCATACTGGGCC
TTGATTCTGAGAGGGCCAAGGAATTGCCTTATATTGCTAGCATGGGAATCTATGTTTTTA
GCAAAGATGCGATGCTTCGGCTTCTTCGTGACAATTTTCCTTCAGCAAATGACTTTGGAA
GTGAGGTTATTCCTGGTGCAACAGAAATTGGAATGAGGGTGCAAGCTTACCTATATGATG
GTTACTGGGAAGATATTGGGACTATTGAAGCATTTTACAATGCAAACTTGGGAATAACCA
AGAAGCCAGTACCAGATTTTAGCTTCTATGACCGTTCTGCCCCAATTTATACACAATCTC
GATACTTGCCTCCTTCGAAGGTCCTTGACGCTGATGTGACTGACAGTGTTATCGGTGAAG
GTTGCGTTATCAATCATTGTAAAATCAACCATTCTGTTGTTGGACTACGCTCGTGCATAT
CGGAAGGCGCAGTAATAGAGGACTCCCTGTTAATGGGTGCAGACTATTATGAGACAGAAA
ATGACAAGAAAGTCCTTTCTGAAACTGGCGGCATTCCCATCGGTATTGGAAAAAATACAC
ACATCAAAAAAGCAATAATTGACAAAAATGCTCGAATCGGAGAAAATGTGAAGATAATCA
ATGTTGATGATATCCAAGAAGCTTCAAGGGAGAGTGATGGATACTTCATCAAAAGTGGCA
TTGTCACCGTGATTAAGGACGCCTTAATTCCTAGCGGGACAGTCATATAGAGATGCAGCC
GTCATCGCCATGTATATAAGTGAGGTTGGCTTGCAGAATTACCGTGACCTCCAATGCATC
CATGACTGGTTTCCCATGCAGCAAGTTCACCAATCTCTGCATGGAAGTGTCGTCGGCGGA
AAGAATAAAACAGTGGCCACCACTCAAGGCCATAATAAAACTGAGAATTGCACTGTTAAC
TAGTATATGAGCAAATGTTTTGAAGTTGAAGTATGAGAATTGCATTAGGTATCTGGATGT
TTTGGCATGTACAATTATGTCCTTTTGTACAGTTTCTACGCTTGAACTGGACATCCGGTG
CTTATTTGCATCGCTGAGCATCTCTAGTCGATCCCCGGTAATTTAGCCCCTCAAAAGGCT
TCTCANAAAAAAAAAAAANNANAAAAAANAAAAAAAAAA

Homology of Contig U35_5161 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g12660.2	501	protein\|glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g27570.1	509
Arabidopsis v10	AT5G48300.1	520	\| Symbols: ADG1, APS1 \| ADP glucose pyrophosphorylase 1 \| chr5:19570326-19572557 FORWARD LENGTH=520