barSeed - Barley Seed Development Database

Probe CUST_28570_PI390587928

Source Contig U35_5162

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28570_PI390587928	Hv_44K_v2	CCTGCTCTTGGTATGAGTTTCTTGTTATTATTATTTTCGGAGACTACAAAGTACAAGTAG	1181	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364297	2324	2e-24	2200 - 2259	100	60 / 60	plus	ABC11436
MLOC	MLOC_51483.1	876	2e-24	809 - 868	100	60 / 60	plus	ABC11436
JLOC1	JLOC1_32892.1	1122	8e-25	910 - 969	100	60 / 60	plus
Harvest21	ABC11436	1276	3e-25	1182 - 1241	100	60 / 60	plus	ABC11436
Harvest35	U35_5162	1287	3e-25	1182 - 1241	100	60 / 60	plus

Contig Sequence (1287 bp)

>U35_5162 1287 Hv_44K_v2
AGAGCTTAAAACCCTTGCCAAAGAGGAGCGAAAACGGCAGCAGCTTGCAGTCGCTGATGT
CATAAAAAATGCAGATGTTGTGCTGTCGACTTTGACAGGTGCATCTTCCAAAAAGATAGC
TGGCATTTCATTTGATTTGGTAATTATTGATGAGGCTGCTCAGGCACTCGAGGTGGCATG
TTGGATAGCCTTACTGAAGGGGGCAAGGTGTGTACTTGCTGGAGACCATCTTCAGCTTTC
TCCAACGATCCAAAGTGTTGAGGCTGAGAAGAAGGGTATGGGAAAGACACTCTTTGAACG
CCTTACAGAAGGTTATGGAGATGAAATCACATCTATGCTCACTGTCCAGTATAGGATGCA
CGAGCTAATCATGAACTGGTCATCAAAAGAACTTTACAGTAACAAGATCAAAGCGCATTC
TAGTGTTGCTGGGCATATGCTCTATGATCTTGAAGGAGTGAATAAATCTTCTTCAACAGA
GCCAACTATTATACTCGTTGACACTACAGGGTGTGACATGGAAGAGGTGAAAGATGAAGA
GGAGAGCACCATGAATGAGGGCGAGGCTGCAGTATCCATTGCTCATGCCAAGTTGCTTGT
TGAGAGTGGTGTCCGTGCATCTGATATTGGCATTATTACGCCATATTCTGCCCAGGTAAC
CTGCCTGAAAATGATGAGAAATAAAGATGCTAAATTGAAGGACTTGGAGATATCAACGGT
TGATGGGTTTCAGGGTAGGGAGAAAGAGGCCATAATCATTTCGATGGTCAGATCCAACCA
AAAGAAAGAGGTTGGGTTCTTGAGCGACCATAGGCGGATGAACGTCGCCGTAACACGAGC
AAGGCGGCAGTGCTGCGTAGTGTGCGATGCCGAGACCGTAAGCAGCGACAGGTTCCTGAA
ACGCCTGGTTGAGTACTTCGAGGAGAACGGCGAGTACCTGAGTGCGTCTGAGTACCAGAG
CAGCTGACCGTTGCAGCATGATACGCTGCTCTTGTGCCCGCTATGCGACCACTGCAGCAG
AGACACCGGAAACAAGCAACATGCGACAACACAAGTGGACATGTTGGTGCAAATCACAGC
CGATGCATACATTGCCACAGAATGCTACAGCTGAACAAGCATCTGGTTAAATTGTTCACC
GTGTTGTGTGGAGTGTAGCAGTTGTAGCCACTTTGTCGACTCCTGCTCTTGGTATGAGTT
TCTTGTTATTATTATTTTCGGAGACTACAAAGTACAAGTAGTACCGATTTTTATTATGAG
ATTGATCCAATAGCAAAAAAAAAAAAA

Homology of Contig U35_5162 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g38990.1	652	0.0	protein\|DNA-binding protein, putative, expressed
Brachypodium v1_2	Bradi1g15360.1	653	0.0
Arabidopsis v10	AT2G03270.1	639	7e-176	DNA-binding protein, putative \| chr2:994071-995990 FORWARD LENGTH=639