barSeed - Barley Seed Development Database

Probe CUST_2856_PI390587928

Source Contig U35_10836

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2856_PI390587928	Hv_44K_v2	GGGAATGCATTGCTGTGAAGAAGTTTCATCTCATGCAGGGGCTTGACAACGAGGAATTTA	351	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70446.3	1912	2e-24	21 - 80	100	60 / 60	plus	None
MLOC	MLOC_70446.4	2011	2e-24	18 - 77	100	60 / 60	plus	None
MLOC	MLOC_70446.5	1906	2e-24	18 - 77	100	60 / 60	plus	None
MLOC	MLOC_70446.1	1885	2e-24	354 - 413	100	60 / 60	plus	None
MLOC	MLOC_70446.2	1983	2e-24	354 - 413	100	60 / 60	plus	None
MLOC	AK370751	3926	3e-22	470 - 528	98	58 / 59	plus	None
JLOC1	JLOC1_46752.1	2549	8e-25	354 - 413	100	60 / 60	plus
Harvest21	ABC46276	414	3e-25	348 - 407	100	60 / 60	plus
Harvest21	ABC33765	646	1e-24	446 - 504	100	59 / 59	plus
Harvest21	ABC22882	977	5e-23	365 - 423	98	58 / 59	plus
Harvest35	U35_10836	418	3e-25	352 - 411	100	60 / 60	plus
Harvest35	U35_37997	646	1e-24	446 - 504	100	59 / 59	plus
Harvest35	U35_14593	1245	5e-23	365 - 423	98	58 / 59	plus

Contig Sequence (418 bp)

>U35_10836 418 Hv_44K_v2
ACTTGATGGCGGCTGCGAGGAAGAAGATCGTGGTGAAGGTTGAGCTGAAAGACGACAGCC
AGTGCAGGAAGGCGCTCAAAGCACTCTCTGCTCTCCGCGGCATCCATGTGATTTCTGCTA
ACCCGAGGCATGGGAACATCACGGTCGTCGGCGAGGTTAACCCCGAGGATGTCCTGGCCA
GGCTGCAAAAGAAGTTGTTTCCAAACGCTCAGATCGTCGCCGTCGGGCCCGTCATGGAGA
CGAACGAAGTTACATTCGAGTTCGTGAACCGCATCACAAACAATTTCTCCGAGGAGCGAA
TAATTGGTCGTGGTGGCCACGGAGTAGTTTTCAAGGGATTACAGGACAATGGGGAATGCA
TTGCTGTGAAGAAGTTTCATCTCATGCAGGGGCTTGACAACGAGGAATTTAAAAATGA

Homology of Contig U35_10836 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None