barSeed - Barley Seed Development Database

Probe CUST_28567_PI390587928

Source Contig U35_5165

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28567_PI390587928	Hv_44K_v2	CAAATGCAATGATTGTGTGCCTTGAATTTCGTCCTATACCAAATTCCTATTGAGAAAGAA	933	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.501	1.450	1.206	0.805	0.308	0.281
Raw	1238.503	1866.961	1366.591	1437.858	191.356	189.722

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12718.1	2466	2e-24	4 - 63	100	60 / 60	minus	ABC15064
JLOC1	JLOC1_8541.1	2287	3e-24	2229 - 2287	100	59 / 59	plus
Harvest35	U35_5165	1021	3e-25	934 - 993	100	60 / 60	plus

Contig Sequence (1021 bp)

>U35_5165 1021 Hv_44K_v2
TAATGCTCCTGTTGCCCAAACCTTCGGTAGTCCACAACAGCCACAGTCAAACCCCCTCCT
TCCAGCTATTCAAGCATGTATCGATGCAATTACAGAGCACCAGAGGCTTAACGCTCTGAT
GAAGGGAGAGCTTATAAAAGGCTTGCTGCCACAGAGTAGCGTCCGTGCTGATTATACTGT
TCACAGAGTTCAAGAACTTGCTGAAGGAACGTGCTTGAAGAATTATGATTACATGGGTTA
TAGAGATGGCTATGGTAAATCAGAGAAAAAATGGACTAGTGAGCTGCCAACTGACTCACA
CCTTCTTCTCTACTTGTTTGCTGCTTTCCTTGAACATCCAAAGTGGATGCTTCATGTTGA
TCCAACCTCCTACTCCGGTGCCCAGTCCAGCAAAAATCCTTTATTTCTAGGAATCCTTCC
ACCGAAAGAGAGGTTTCCGGAGAAGTATGTTGCTTTGATATCTGGCGTTCCAGCAATTAT
TCACCCAGGAGCTCTTGTGCTAGCTGTGGGCAAGCAGAGTCCTCCAGTTTTTGCTCTATA
CTGGGACAAGAAACTGCAGTTTTCTCTTCAGGGAAGAACAGCACTGTGGGACGCCATTTT
GCTTCTATGCCACCAAATCAAAGTTGGTTATGGCGGTATTGTCAGGGGAACCCACATCGG
GTCTTCTGCCTTGAACATCCTTTCTGTTCTTGATTCAGACATGGAGAGCTGAAGAAGGGC
TGTTTGCTTGCCAGGAGGGAACTGTTGTAGTACTGGTTTCTACCACCATTAAGGGGATTA
ATTATGACTGTCCCAGTTGCTGGTGCTACATTGTTATCAACACCAGCAATGTCTTGAACT
AGCCTAGTGTTAGAATGCGATATGCCCTAGTCGAGGGACACCTGAAATTTATTACTGAGT
TGTATCTTAAAATCACTGACTGTCCAAACTCCTCAAATGCAATGATTGTGTGCCTTGAAT
TTCGTCCTATACCAAATTCCTATTGAGAAAGAAAAATAAATACTTGTCAAAAAAAAAAAA
A

Homology of Contig U35_5165 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g17950.1	665	2e-140	protein\|expressed protein
Brachypodium v1_2	Bradi1g65650.1	664	1e-149
Arabidopsis v10	AT1G07970.1	693	2e-108	CONTAINS InterPro DOMAIN/s: Cytochrome B561-related, N-terminal (InterPro:IPR019176); Has 215 Blast hits to 213 proteins in 79 species: Archae - 0; Bacteria - 6; Metazoa - 131; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). \| chr1:2469528-2472518 REVERSE LENGTH=693